Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G18480 - ( AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product) )

74 Proteins interacs with AT3G18480
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G45200

Predicted

Synthetic Rescue

Dosage Growth Defect

interaction prediction

FSW = 0.0151

Class C:

golgi

GOS12 (GOLGI SNARE 12) SNARE BINDING
AT1G64880

Predicted

Phenotypic Suppression

FSW = 0.0701

Class C:

golgi

RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT4G16660

Predicted

Phenotypic Enhancement

FSW = 0.1751

Unknown

HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE
AT1G16240

Predicted

Phenotypic Enhancement

FSW = 0.0405

Unknown

SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR
AT5G10350

Predicted

Affinity Capture-Western

Affinity Capture-Western

Co-purification

FSW = 0.1371

Unknown

POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT3G22890

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.1313

Unknown

APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT5G51820

Predicted

Phenotypic Enhancement

FSW = 0.1296

Unknown

PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT5G53480

Predicted

Synthetic Lethality

FSW = 0.0057

Unknown

IMPORTIN BETA-2 PUTATIVE
AT1G10070

Predicted

Phenotypic Enhancement

FSW = 0.0272

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT3G27100

Predicted

Phenotypic Suppression

FSW = 0.0135

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST ENVELOPE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSCRIPTION FACTOR ENHANCER OF YELLOW 2 (INTERPROIPR018783) HAS 197 BLAST HITS TO 197 PROTEINS IN 62 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 152 FUNGI - 8 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 13 (SOURCE NCBI BLINK)
AT1G45145

Predicted

Phenotypic Enhancement

FSW = 0.1141

Unknown

ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT5G60540

Predicted

Phenotypic Enhancement

FSW = 0.2343

Unknown

PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION
AT3G47370

Predicted

Affinity Capture-MS

FSW = 0.0207

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20B)
AT1G07670

Predicted

Phenotypic Enhancement

FSW = 0.0047

Unknown

CALCIUM-TRANSPORTING ATPASE
AT2G32670

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.2550

Unknown

ATVAMP725
AT1G04750

Predicted

Phenotypic Enhancement

FSW = 0.0990

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT1G80050

Predicted

Phenotypic Enhancement

FSW = 0.0989

Unknown

APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT2G37790

Predicted

Synthetic Lethality

FSW = 0.1436

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT4G18800

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.0968

Unknown

ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT3G04460

Predicted

Synthetic Lethality

FSW = 0.1070

Unknown

PEX12 PROTEIN BINDING / ZINC ION BINDING
AT1G79350

Predicted

Phenotypic Enhancement

FSW = 0.0416

Unknown

EMB1135 (EMBRYO DEFECTIVE 1135) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G54610

Predicted

biochemical

FSW = 0.0115

Unknown

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G13445

Predicted

Phenotypic Enhancement

FSW = 0.0722

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT1G76300

Predicted

Phenotypic Enhancement

FSW = 0.0864

Unknown

SMD3 (SNRNP CORE PROTEIN SMD3)
AT5G47630

Predicted

Synthetic Lethality

FSW = 0.0586

Unknown

MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING
AT3G49920

Predicted

Phenotypic Suppression

FSW = 0.1023

Unknown

VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL
AT4G33710

Predicted

Phenotypic Enhancement

FSW = 0.1547

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT1G10130

Predicted

interologs mapping

FSW = 0.0050

Unknown

ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT1G52300

Predicted

Synthetic Lethality

FSW = 0.0676

Unknown

60S RIBOSOMAL PROTEIN L37 (RPL37B)
AT5G41150

Predicted

interaction prediction

FSW = 0.0058

Unknown

UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT3G60360

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2146

Unknown

EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)
AT1G62800

Predicted

Phenotypic Enhancement

FSW = 0.1013

Unknown

ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT2G29540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Co-purification

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Phenotypic Suppression

FSW = 0.3217

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G02020

Predicted

Phenotypic Suppression

FSW = 0.0149

Unknown

SWN (SWINGER) TRANSCRIPTION FACTOR
AT3G23060

Predicted

Phenotypic Suppression

FSW = 0.0275

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT3G59540Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.1402

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT5G15540

Predicted

Phenotypic Enhancement

FSW = 0.0109

Unknown

EMB2773 (EMBRYO DEFECTIVE 2773) BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G12280

Predicted

two hybrid

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0028

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT3G12980

Predicted

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0115

Unknown

HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT1G02100

Predicted

Affinity Capture-Western

Co-purification

Phenotypic Suppression

FSW = 0.0952

Unknown

LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
AT1G20693

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.1825

Unknown

HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G29970

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1945

Unknown

RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)
AT1G55300

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1473

Unknown

TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G59950

Predicted

Affinity Capture-MS

FSW = 0.0308

Unknown

ALDO/KETO REDUCTASE PUTATIVE
AT2G03130

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1787

Unknown

RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT2G15230

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0593

Unknown

ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1) GALACTOLIPASE/ HYDROLASE/ PHOSPHOLIPASE/ TRIACYLGLYCEROL LIPASE
AT2G33560

Predicted

Affinity Capture-Western

Co-purification

FSW = 0.0885

Unknown

SPINDLE CHECKPOINT PROTEIN-RELATED
AT2G34750

Predicted

Phenotypic Enhancement

FSW = 0.1366

Unknown

RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN
AT2G34770

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0052

Unknown

FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE
AT2G34890

Predicted

Affinity Capture-Western

Co-purification

FSW = 0.0857

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT2G48100

Predicted

Phenotypic Enhancement

FSW = 0.0834

Unknown

EXONUCLEASE FAMILY PROTEIN
AT3G06483

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1404

Unknown

PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT3G09640

Predicted

Affinity Capture-Western

Co-purification

FSW = 0.1670

Unknown

APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE
AT1G18550

Predicted

synthetic growth defect

FSW = 0.0104

Unknown

ATP BINDING / MICROTUBULE MOTOR
AT1G26320

Predicted

Affinity Capture-MS

FSW = 0.1302

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT1G78770

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1395

Unknown

CELL DIVISION CYCLE FAMILY PROTEIN
AT2G24960

Predicted

Phenotypic Enhancement

FSW = 0.1000

Unknown

UNKNOWN PROTEIN
AT2G47570

Predicted

Phenotypic Suppression

FSW = 0.0237

Unknown

60S RIBOSOMAL PROTEIN L18 (RPL18A)
AT3G11230

Predicted

Synthetic Lethality

FSW = 0.2294

Unknown

YIPPEE FAMILY PROTEIN
AT3G62770

Predicted

Synthetic Lethality

FSW = 0.0063

Unknown

ATATG18A
AT3G63150

Predicted

Affinity Capture-Western

FSW = 0.0208

Unknown

MIRO2 (MIRO-RELATED GTP-ASE 2) GTPASE/ CALCIUM ION BINDING
AT4G27130

Predicted

Phenotypic Suppression

FSW = 0.1705

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT5G05070

Predicted

Phenotypic Enhancement

FSW = 0.0480

Unknown

ZINC ION BINDING
AT5G67540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Co-purification

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Phenotypic Suppression

Co-purification

FSW = 0.3212

Unknown

GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT3G18850

Predicted

Phenotypic Enhancement

FSW = 0.0573

Unknown

LPAT5 ACYLTRANSFERASE
AT3G27440

Predicted

Phenotypic Suppression

FSW = 0.0627

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT3G50780

Predicted

Phenotypic Enhancement

FSW = 0.0434

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK)
AT4G19645

Predicted

Phenotypic Enhancement

FSW = 0.1148

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT4G23895

Predicted

Phenotypic Enhancement

FSW = 0.0989

Unknown

PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN-RELATED
AT4G36050

Predicted

Phenotypic Suppression

FSW = 0.0844

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT5G13860

Predicted

Phenotypic Enhancement

FSW = 0.0363

Unknown

ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE
AT5G44830

Predicted

Phenotypic Enhancement

FSW = 0.1687

Unknown

GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN
AT2G03380

Predicted

Gene fusion method

FSW = 0.0272

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT3G15130

Predicted

Gene fusion method

FSW = 0.0285

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454