Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G18480 - ( AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product) )
74 Proteins interacs with AT3G18480Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G45200 | PredictedSynthetic RescueDosage Growth Defectinteraction prediction | FSW = 0.0151
| Class C:golgi | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT1G64880 | PredictedPhenotypic Suppression | FSW = 0.0701
| Class C:golgi | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT4G16660 | PredictedPhenotypic Enhancement | FSW = 0.1751
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT1G16240 | PredictedPhenotypic Enhancement | FSW = 0.0405
| Unknown | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT5G10350 | PredictedAffinity Capture-WesternAffinity Capture-WesternCo-purification | FSW = 0.1371
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT3G22890 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.1313
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G51820 | PredictedPhenotypic Enhancement | FSW = 0.1296
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT5G53480 | PredictedSynthetic Lethality | FSW = 0.0057
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT1G10070 | PredictedPhenotypic Enhancement | FSW = 0.0272
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT3G27100 | PredictedPhenotypic Suppression | FSW = 0.0135
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST ENVELOPE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSCRIPTION FACTOR ENHANCER OF YELLOW 2 (INTERPROIPR018783) HAS 197 BLAST HITS TO 197 PROTEINS IN 62 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 152 FUNGI - 8 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 13 (SOURCE NCBI BLINK) |
AT1G45145 | PredictedPhenotypic Enhancement | FSW = 0.1141
| Unknown | ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT5G60540 | PredictedPhenotypic Enhancement | FSW = 0.2343
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.0047
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT2G32670 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2550
| Unknown | ATVAMP725 |
AT1G04750 | PredictedPhenotypic Enhancement | FSW = 0.0990
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT1G80050 | PredictedPhenotypic Enhancement | FSW = 0.0989
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT2G37790 | PredictedSynthetic Lethality | FSW = 0.1436
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G18800 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.0968
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT3G04460 | PredictedSynthetic Lethality | FSW = 0.1070
| Unknown | PEX12 PROTEIN BINDING / ZINC ION BINDING |
AT1G79350 | PredictedPhenotypic Enhancement | FSW = 0.0416
| Unknown | EMB1135 (EMBRYO DEFECTIVE 1135) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G54610 | Predictedbiochemical | FSW = 0.0115
| Unknown | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.0722
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G76300 | PredictedPhenotypic Enhancement | FSW = 0.0864
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT5G47630 | PredictedSynthetic Lethality | FSW = 0.0586
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT3G49920 | PredictedPhenotypic Suppression | FSW = 0.1023
| Unknown | VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL |
AT4G33710 | PredictedPhenotypic Enhancement | FSW = 0.1547
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G10130 | Predictedinterologs mapping | FSW = 0.0050
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT1G52300 | PredictedSynthetic Lethality | FSW = 0.0676
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT5G41150 | Predictedinteraction prediction | FSW = 0.0058
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT3G60360 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2146
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT1G62800 | PredictedPhenotypic Enhancement | FSW = 0.1013
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT2G29540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-purificationPhenotypic Suppression | FSW = 0.3217
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT4G02020 | PredictedPhenotypic Suppression | FSW = 0.0149
| Unknown | SWN (SWINGER) TRANSCRIPTION FACTOR |
AT3G23060 | PredictedPhenotypic Suppression | FSW = 0.0275
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT3G59540 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1402
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT5G15540 | PredictedPhenotypic Enhancement | FSW = 0.0109
| Unknown | EMB2773 (EMBRYO DEFECTIVE 2773) BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G12280 | Predictedtwo hybridReconstituted ComplexAffinity Capture-Western | FSW = 0.0028
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT3G12980 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0115
| Unknown | HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT1G02100 | PredictedAffinity Capture-WesternCo-purificationPhenotypic Suppression | FSW = 0.0952
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G20693 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.1825
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G29970 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1945
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT1G55300 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1473
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G59950 | PredictedAffinity Capture-MS | FSW = 0.0308
| Unknown | ALDO/KETO REDUCTASE PUTATIVE |
AT2G03130 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1787
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT2G15230 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0593
| Unknown | ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1) GALACTOLIPASE/ HYDROLASE/ PHOSPHOLIPASE/ TRIACYLGLYCEROL LIPASE |
AT2G33560 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0885
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT2G34750 | PredictedPhenotypic Enhancement | FSW = 0.1366
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT2G34770 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0052
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT2G34890 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0857
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT2G48100 | PredictedPhenotypic Enhancement | FSW = 0.0834
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G06483 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1404
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT3G09640 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.1670
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT1G18550 | Predictedsynthetic growth defect | FSW = 0.0104
| Unknown | ATP BINDING / MICROTUBULE MOTOR |
AT1G26320 | PredictedAffinity Capture-MS | FSW = 0.1302
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G78770 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1395
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G24960 | PredictedPhenotypic Enhancement | FSW = 0.1000
| Unknown | UNKNOWN PROTEIN |
AT2G47570 | PredictedPhenotypic Suppression | FSW = 0.0237
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G11230 | PredictedSynthetic Lethality | FSW = 0.2294
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G62770 | PredictedSynthetic Lethality | FSW = 0.0063
| Unknown | ATATG18A |
AT3G63150 | PredictedAffinity Capture-Western | FSW = 0.0208
| Unknown | MIRO2 (MIRO-RELATED GTP-ASE 2) GTPASE/ CALCIUM ION BINDING |
AT4G27130 | PredictedPhenotypic Suppression | FSW = 0.1705
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G05070 | PredictedPhenotypic Enhancement | FSW = 0.0480
| Unknown | ZINC ION BINDING |
AT5G67540 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternPhenotypic SuppressionCo-purification | FSW = 0.3212
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G18850 | PredictedPhenotypic Enhancement | FSW = 0.0573
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G27440 | PredictedPhenotypic Suppression | FSW = 0.0627
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT3G50780 | PredictedPhenotypic Enhancement | FSW = 0.0434
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT4G19645 | PredictedPhenotypic Enhancement | FSW = 0.1148
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G23895 | PredictedPhenotypic Enhancement | FSW = 0.0989
| Unknown | PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN-RELATED |
AT4G36050 | PredictedPhenotypic Suppression | FSW = 0.0844
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G13860 | PredictedPhenotypic Enhancement | FSW = 0.0363
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G44830 | PredictedPhenotypic Enhancement | FSW = 0.1687
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT2G03380 | PredictedGene fusion method | FSW = 0.0272
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT3G15130 | PredictedGene fusion method | FSW = 0.0285
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454