Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G18520 - ( HDA15 histone deacetylase )

51 Proteins interacs with AT3G18520
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G07810

Predicted

Phenotypic Enhancement

FSW = 0.0168

Unknown

ECA1 (ER-TYPE CA2+-ATPASE 1) CALCIUM-TRANSPORTING ATPASE
AT3G20550

Predicted

Phenotypic Suppression

FSW = 0.0038

Unknown

DDL (DAWDLE)
AT1G32470

Predicted

Phenotypic Enhancement

FSW = 0.0119

Unknown

GLYCINE CLEAVAGE SYSTEM H PROTEIN MITOCHONDRIAL PUTATIVE
AT5G51540

Predicted

Affinity Capture-MS

FSW = 0.0196

Unknown

METALLOENDOPEPTIDASE
AT2G28190

Predicted

Phenotypic Enhancement

FSW = 0.0860

Unknown

CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT1G12520

Predicted

Phenotypic Enhancement

FSW = 0.0742

Unknown

ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT5G63110

Predicted

Phenotypic Enhancement

FSW = 0.1888

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT5G60540

Predicted

Phenotypic Enhancement

FSW = 0.0115

Unknown

PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION
AT2G01630

Predicted

Phenotypic Enhancement

FSW = 0.0102

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN / BETA-13-GLUCANASE PUTATIVE
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.1011

Unknown

SEC22 TRANSPORTER
AT1G50310

Predicted

interologs mapping

FSW = 0.0080

Unknown

STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G12480

Predicted

biochemical

FSW = 0.0065

Unknown

CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G18524

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0159

Unknown

MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT3G12810

Predicted

Phenotypic Enhancement

FSW = 0.1474

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G55620

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0061

Unknown

EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT4G38130

Predicted

Synthetic Lethality

FSW = 0.0259

Unknown

HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT1G02740

Predicted

Phenotypic Enhancement

FSW = 0.1429

Unknown

CHROMATIN BINDING
AT2G36740

Predicted

Phenotypic Enhancement

FSW = 0.1585

Unknown

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G38560

Predicted

Phenotypic Enhancement

FSW = 0.1627

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT3G19210

Predicted

Phenotypic Enhancement

FSW = 0.0746

Unknown

ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G08630

Predicted

Phenotypic Enhancement

FSW = 0.0487

Unknown

DDT DOMAIN-CONTAINING PROTEIN
AT5G18620

Predicted

Phenotypic Enhancement

FSW = 0.0428

Unknown

CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT2G44950

Predicted

Phenotypic Suppression

FSW = 0.1432

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G59900

Predicted

Phenotypic Enhancement

FSW = 0.0309

Unknown

AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT3G54840

Predicted

Phenotypic Suppression

FSW = 0.0300

Unknown

ARA6 GTP BINDING / GTPASE
AT4G13460

Predicted

Phenotypic Enhancement

FSW = 0.0186

Unknown

SUVH9 HISTONE-LYSINE N-METHYLTRANSFERASE/ ZINC ION BINDING
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0165

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT5G20850

Predicted

Phenotypic Enhancement

FSW = 0.0369

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G09020

Predicted

Phenotypic Suppression

FSW = 0.0475

Unknown

SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR
AT1G49980

Predicted

Phenotypic Enhancement

FSW = 0.0532

Unknown

DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING
AT2G24960

Predicted

Phenotypic Enhancement

FSW = 0.0074

Unknown

UNKNOWN PROTEIN
AT2G44150

Predicted

Phenotypic Enhancement

FSW = 0.1058

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT1G52740

Predicted

Phenotypic Enhancement

FSW = 0.1456

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G54320

Predicted

Phenotypic Suppression

FSW = 0.0198

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT1G59890

Predicted

Phenotypic Enhancement

FSW = 0.1537

Unknown

SNL5 (SIN3-LIKE 5)
AT1G68200

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0110

Unknown

ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT3G01090

Predicted

Phenotypic Enhancement

FSW = 0.0813

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G18860

Predicted

Phenotypic Suppression

FSW = 0.1472

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G49660

Predicted

Reconstituted Complex

FSW = 0.1253

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G14060

Predicted

Synthetic Lethality

FSW = 0.0159

Unknown

CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE
AT5G55310

Predicted

Phenotypic Suppression

FSW = 0.0699

Unknown

TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT5G61150

Predicted

Phenotypic Suppression

FSW = 0.1956

Unknown

VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT3G22480

Predicted

Phenotypic Enhancement

FSW = 0.1129

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT4G04210

Predicted

Phenotypic Enhancement

FSW = 0.0787

Unknown

PUX4 PROTEIN BINDING
AT4G33100

Predicted

Phenotypic Suppression

FSW = 0.1230

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MITOCHONDRIAL DISTRIBUTION AND MORPHOLOGY FAMILY 35/APOPTOSIS (INTERPROIPR007918) HAS 160 BLAST HITS TO 160 PROTEINS IN 70 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 46 PLANTS - 13 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK)
AT4G38630

Predicted

Phenotypic Enhancement

FSW = 0.0547

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G10260

Predicted

Phenotypic Enhancement

FSW = 0.1147

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10790

Predicted

Phenotypic Enhancement

FSW = 0.1041

Unknown

UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G41700

Predicted

Phenotypic Enhancement

FSW = 0.0792

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G46030

Predicted

Phenotypic Enhancement

FSW = 0.1265

Unknown

UNKNOWN PROTEIN
AT5G49510

Predicted

Phenotypic Enhancement

FSW = 0.1102

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454