Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G18680 - ( aspartate/glutamate/uridylate kinase family protein )
32 Proteins interacs with AT3G18680Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33210 | Predictedpull down | FSW = 0.0199
| Class C:plastid | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT3G27925 | Predictedpull down | FSW = 0.0539
| Class C:plastid | DEGP1 (DEGP PROTEASE 1) SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT2G33800 | Predictedpull down | FSW = 0.2675
| Class C:plastid | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT3G63490 | Predictedpull down | FSW = 0.1600
| Class C:plastid | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
AT1G62750 | Predictedpull down | FSW = 0.1420
| Class C:plastid | SCO1 (SNOWY COTYLEDON 1) ATP BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT4G34620 | Predictedpull down | FSW = 0.1641
| Class C:plastid | SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G44890 | Predictedpull down | FSW = 0.0711
| Class C:plastid | RPL9 (RIBOSOMAL PROTEIN L9) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G01310 | Predictedpull down | FSW = 0.0859
| Class C:plastid | RIBOSOMAL PROTEIN L5 FAMILY PROTEIN |
AT5G30510 | Predictedpull down | FSW = 0.1487
| Class C:plastid | RPS1 (RIBOSOMAL PROTEIN S1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G48350 | Predictedpull down | FSW = 0.1316
| Class C:plastid | RIBOSOMAL PROTEIN L18 FAMILY PROTEIN |
AT1G79050 | Predictedpull down | FSW = 0.1548
| Class C:plastid | DNA REPAIR PROTEIN RECA |
AT2G22360 | Predictedpull down | FSW = 0.2000
| Class C:plastid | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT3G13120 | Predictedpull down | FSW = 0.0572
| Class C:plastid | 30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE |
AT3G27850 | Predictedpull down | FSW = 0.0222
| Class C:plastid | RPL12-C (RIBOSOMAL PROTEIN L12-C) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G03680 | Predictedtandem affinity purification | FSW = 0.0627
| Class C:plastid | ATHM1 ENZYME ACTIVATOR |
AT1G24240 | Predictedpull down | FSW = 0.0821
| Class C:plastid | RIBOSOMAL PROTEIN L19 FAMILY PROTEIN |
AT1G32990 | Predictedpull down | FSW = 0.2204
| Class C:plastid | PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G78630 | Predictedpull down | FSW = 0.1571
| Class C:plastid | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G43030 | Predictedpull down | FSW = 0.0381
| Class C:plastid | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT4G01800 | Predictedpull down | FSW = 0.2338
| Class C:plastid | PREPROTEIN TRANSLOCASE SECA SUBUNIT PUTATIVE |
ATCG00160 | Predictedpull down | FSW = 0.1185
| Class C:plastid | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
ATCG00800 | Predictedpull down | FSW = 0.1134
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG00810 | Predictedpull down | FSW = 0.0487
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG00830 | Predictedpull down | FSW = 0.1646
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG01240 | Predictedpull down | FSW = 0.0780
| Class C:plastid | 30S CHLOROPLAST RIBOSOMAL PROTEIN S7 |
AT4G37910 | Predictedpull down | FSW = 0.1461
| Unknown | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT4G02930 | Predictedpull down | FSW = 0.1057
| Unknown | ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE |
AT4G30930 | Predictedpull down | FSW = 0.0509
| Unknown | NFD1 (NUCLEAR FUSION DEFECTIVE 1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G11120 | Predictedpull down | FSW = 0.1729
| Unknown | TRANSLATION ELONGATION FACTOR TS (EF-TS) PUTATIVE |
AT1G24793 | Predictedpull down | FSW = 0.1250
| Unknown | UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE DEACETYLASE |
AT2G16930 | Predictedpull down | FSW = 0.1462
| Unknown | RIBOSOMAL PROTEIN L27 FAMILY PROTEIN |
AT2G20060 | Predictedpull down | FSW = 0.2863
| Unknown | RIBOSOMAL PROTEIN L4 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454