Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G18680 - ( aspartate/glutamate/uridylate kinase family protein )

32 Proteins interacs with AT3G18680
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33210

Predicted

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FSW = 0.0199

Class C:

plastid

HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT3G27925

Predicted

pull down

FSW = 0.0539

Class C:

plastid

DEGP1 (DEGP PROTEASE 1) SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE
AT2G33800

Predicted

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FSW = 0.2675

Class C:

plastid

RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT3G63490

Predicted

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FSW = 0.1600

Class C:

plastid

RIBOSOMAL PROTEIN L1 FAMILY PROTEIN
AT1G62750

Predicted

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FSW = 0.1420

Class C:

plastid

SCO1 (SNOWY COTYLEDON 1) ATP BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT4G34620

Predicted

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FSW = 0.1641

Class C:

plastid

SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G44890

Predicted

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FSW = 0.0711

Class C:

plastid

RPL9 (RIBOSOMAL PROTEIN L9) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G01310

Predicted

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FSW = 0.0859

Class C:

plastid

RIBOSOMAL PROTEIN L5 FAMILY PROTEIN
AT5G30510

Predicted

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FSW = 0.1487

Class C:

plastid

RPS1 (RIBOSOMAL PROTEIN S1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G48350

Predicted

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FSW = 0.1316

Class C:

plastid

RIBOSOMAL PROTEIN L18 FAMILY PROTEIN
AT1G79050

Predicted

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FSW = 0.1548

Class C:

plastid

DNA REPAIR PROTEIN RECA
AT2G22360

Predicted

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FSW = 0.2000

Class C:

plastid

DNAJ HEAT SHOCK FAMILY PROTEIN
AT3G13120

Predicted

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FSW = 0.0572

Class C:

plastid

30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE
AT3G27850

Predicted

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FSW = 0.0222

Class C:

plastid

RPL12-C (RIBOSOMAL PROTEIN L12-C) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G03680

Predicted

tandem affinity purification

FSW = 0.0627

Class C:

plastid

ATHM1 ENZYME ACTIVATOR
AT1G24240

Predicted

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FSW = 0.0821

Class C:

plastid

RIBOSOMAL PROTEIN L19 FAMILY PROTEIN
AT1G32990

Predicted

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FSW = 0.2204

Class C:

plastid

PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G78630

Predicted

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FSW = 0.1571

Class C:

plastid

EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G43030

Predicted

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FSW = 0.0381

Class C:

plastid

RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT4G01800

Predicted

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FSW = 0.2338

Class C:

plastid

PREPROTEIN TRANSLOCASE SECA SUBUNIT PUTATIVE
ATCG00160Predicted

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FSW = 0.1185

Class C:

plastid

CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00800Predicted

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FSW = 0.1134

Class C:

plastid

ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00810Predicted

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FSW = 0.0487

Class C:

plastid

ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00830Predicted

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FSW = 0.1646

Class C:

plastid

ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG01240Predicted

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FSW = 0.0780

Class C:

plastid

30S CHLOROPLAST RIBOSOMAL PROTEIN S7
AT4G37910

Predicted

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FSW = 0.1461

Unknown

MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT4G02930

Predicted

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FSW = 0.1057

Unknown

ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT4G30930

Predicted

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FSW = 0.0509

Unknown

NFD1 (NUCLEAR FUSION DEFECTIVE 1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G11120

Predicted

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FSW = 0.1729

Unknown

TRANSLATION ELONGATION FACTOR TS (EF-TS) PUTATIVE
AT1G24793

Predicted

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FSW = 0.1250

Unknown

UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE DEACETYLASE
AT2G16930

Predicted

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FSW = 0.1462

Unknown

RIBOSOMAL PROTEIN L27 FAMILY PROTEIN
AT2G20060

Predicted

pull down

FSW = 0.2863

Unknown

RIBOSOMAL PROTEIN L4 FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454