Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G18790 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN chloroplast EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Isy1-like splicing (InterProIPR009360) Has 1075 Blast hits to 879 proteins in 176 species Archae - 8 Bacteria - 11 Metazoa - 379 Fungi - 177 Plants - 27 Viruses - 9 Other Eukaryotes - 464 (source NCBI BLink) )

40 Proteins interacs with AT3G18790
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G18165

Experimental

FSW = 0.2011

Class B:

unclear

plastid

nucleus

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

MOS4 (MODIFIER OF SNC14)
AT1G09760

Predicted

two hybrid

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2060

Class C:

plastid

U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING
AT1G09770

Predicted

two hybrid

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

FSW = 0.1826

Class C:

plastid

ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR
AT2G33340

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Co-purification

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Synthetic Lethality

interaction prediction

FSW = 0.1182

Class C:

plastid

NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G16480

Predicted

Affinity Capture-MS

FSW = 0.0486

Unknown

MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING
AT3G62870

Predicted

Affinity Capture-MS

synthetic growth defect

FSW = 0.0264

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G20960

Predicted

Affinity Capture-MS

FSW = 0.1911

Unknown

EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G40370

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1005

Unknown

GLUTAREDOXIN PUTATIVE
AT5G19450

Predicted

Phenotypic Suppression

FSW = 0.0339

Unknown

CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G59950

Predicted

Affinity Capture-MS

FSW = 0.0388

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G79020

Predicted

Affinity Capture-MS

FSW = 0.0119

Unknown

TRANSCRIPTION FACTOR-RELATED
AT1G04510

Predicted

Co-purification

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Synthetic Lethality

Co-expression

FSW = 0.1159

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G34430

Predicted

Affinity Capture-MS

FSW = 0.0782

Unknown

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT4G30330

Predicted

Affinity Capture-MS

FSW = 0.0801

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT2G03120

Predicted

Affinity Capture-MS

FSW = 0.0817

Unknown

ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE
AT4G15900

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1168

Unknown

PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G15960

Predicted

Affinity Capture-MS

FSW = 0.1167

Unknown

NRAMP6 INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER
AT1G26140

Predicted

Affinity Capture-MS

FSW = 0.1782

Unknown

UNKNOWN PROTEIN
AT1G26690

Predicted

Phenotypic Enhancement

FSW = 0.0244

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT2G20290

Predicted

Phenotypic Enhancement

FSW = 0.0096

Unknown

XIG MOTOR/ PROTEIN BINDING
AT2G22040

Predicted

Affinity Capture-MS

FSW = 0.1029

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G39590

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0506

Unknown

40S RIBOSOMAL PROTEIN S15A (RPS15AC)
AT3G11530

Predicted

Synthetic Rescue

FSW = 0.0338

Unknown

VACUOLAR PROTEIN SORTING 55 FAMILY PROTEIN / VPS55 FAMILY PROTEIN
AT3G16565

Predicted

Affinity Capture-MS

FSW = 0.0390

Unknown

ATP BINDING / ALANINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G09270

Predicted

Affinity Capture-MS

FSW = 0.0682

Unknown

IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER
AT1G17070

Predicted

Affinity Capture-Western

FSW = 0.2407

Unknown

D111/G-PATCH DOMAIN-CONTAINING PROTEIN
AT1G17130

Predicted

Affinity Capture-Western

FSW = 0.2337

Unknown

CELL CYCLE CONTROL PROTEIN-RELATED
AT1G47830

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0745

Unknown

CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT1G53900

Predicted

Affinity Capture-MS

FSW = 0.0638

Unknown

GTP BINDING / TRANSLATION INITIATION FACTOR
AT1G60680

Predicted

Affinity Capture-MS

FSW = 0.0224

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT2G17620

Predicted

Affinity Capture-MS

FSW = 0.0451

Unknown

CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G13010

Predicted

Synthetic Rescue

Affinity Capture-Western

FSW = 0.0913

Unknown

EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT5G28740

Predicted

interaction prediction

two hybrid

two hybrid

two hybrid

Reconstituted Complex

interologs mapping

Affinity Capture-Western

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Reconstituted Complex

Co-expression

FSW = 0.3348

Unknown

TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED
AT5G41770

Predicted

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

interaction prediction

Co-expression

FSW = 0.1710

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT4G37680

Predicted

Affinity Capture-MS

FSW = 0.1021

Unknown

HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR
AT5G17440

Predicted

Phenotypic Suppression

FSW = 0.0749

Unknown

LUC7 N_TERMINUS DOMAIN-CONTAINING PROTEIN
AT5G46400

Predicted

two hybrid

FSW = 0.0776

Unknown

PRP39-2
AT5G67290

Predicted

Phenotypic Suppression

FSW = 0.1087

Unknown

FAD-DEPENDENT OXIDOREDUCTASE FAMILY PROTEIN
AT3G16650

Predicted

Affinity Capture-MS

FSW = 0.1790

Unknown

PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2)
AT3G13210

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.1626

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454