Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G19040 - ( HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2) DNA binding / histone acetyltransferase/ transcription cofactor )
18 Proteins interacs with AT3G19040Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G12610 | Predictedin vitroin vitroin vitroin vivoin vivoin vivoin vivoin vitro | FSW = 0.1029
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN |
AT3G58680 | Predictedin vitro | FSW = 0.1546
| Unknown | MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT3G13445 | Predictedin vitrotwo hybrid | FSW = 0.0819
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT5G16820 | Predictedin vitro | FSW = 0.0887
| Unknown | HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G07480 | Predictedin vitroin vivo | FSW = 0.1465
| Unknown | TRANSCRIPTION FACTOR IIA LARGE SUBUNIT / TFIIA LARGE SUBUNIT (TFIIA-L) |
AT5G25150 | Predictedin vivoin vitro | FSW = 0.1315
| Unknown | TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR |
AT1G55520 | Predictedtwo hybrid | FSW = 0.0810
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT5G09250 | Predictedin vitro | FSW = 0.2315
| Unknown | KIWI DNA BINDING / PROTEIN BINDING / TRANSCRIPTION COACTIVATOR |
AT2G35320 | Predictedtwo hybrid | FSW = 0.0224
| Unknown | ATEYA (ARABIDOPSIS THALIANA EYES ABSENT HOMOLOG) PROTEIN TYROSINE PHOSPHATASE METAL-DEPENDENT |
AT3G12280 | Predictedin vitroin vitroin vivoin vivoPhenotypic Enhancementin vitroin vivo | FSW = 0.0257
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G43130 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.1325
| Unknown | TAF4 (TBP-ASSOCIATED FACTOR 4) TRANSCRIPTION INITIATION FACTOR |
AT5G49010 | Predictedtwo hybrid | FSW = 0.0201
| Unknown | SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) |
AT1G54360 | Predictedin vitroin vivo | FSW = 0.2319
| Unknown | TAF6B4 (TBP-ASSOCIATED FACTOR 6B4) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G55300 | Predictedin vitroin vivotwo hybrid | FSW = 0.0668
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G73960 | Predictedin vitroin vivo | FSW = 0.1543
| Unknown | TAF2 (TBP-ASSOCIATED FACTOR 2) METALLOPEPTIDASE/ ZINC ION BINDING |
AT4G11080 | Predictedin vivoin vitrotwo hybrid | FSW = 0.2315
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT5G11300 | Predictedin vitroin vivo | FSW = 0.0618
| Unknown | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G23420 | Predictedin vitro | FSW = 0.1070
| Unknown | HMGB6 TRANSCRIPTION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454