Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G19160 - ( ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) adenylate dimethylallyltransferase )
38 Proteins interacs with AT3G19160Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.1693
| Class C:plastid | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT3G20390 | PredictedAffinity Capture-MS | FSW = 0.3593
| Class C:plastid | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT5G19040 | PredictedShared biological functionGene fusion methodCo-expression | FSW = 0.0780
| Class C:plastid | IPT5 ATP BINDING / TRNA ISOPENTENYLTRANSFERASE/ TRANSFERASE TRANSFERRING ALKYL OR ARYL (OTHER THAN METHYL) GROUPS |
AT3G12580 | PredictedAffinity Capture-MS | FSW = 0.1627
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT1G54270 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1911
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G62870 | PredictedAffinity Capture-MS | FSW = 0.0173
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.0967
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT5G20010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3112
| Unknown | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT5G62880 | PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | ARAC10 GTP BINDING |
AT2G14120 | PredictedAffinity Capture-MS | FSW = 0.1340
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT3G61430 | PredictedAffinity Capture-MS | FSW = 0.2966
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT4G28950 | PredictedAffinity Capture-MS | FSW = 0.1060
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT3G09740 | PredictedAffinity Capture-MS | FSW = 0.3440
| Unknown | SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER |
AT1G63290 | PredictedAffinity Capture-MS | FSW = 0.3384
| Unknown | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
AT4G35310 | PredictedAffinity Capture-MS | FSW = 0.3445
| Unknown | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G00520 | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.1678
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.1660
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT2G18450 | PredictedAffinity Capture-MS | FSW = 0.3355
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.1790
| Unknown | BINDING |
AT4G24650 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.1429
| Unknown | ATIPT4 ADENYLATE DIMETHYLALLYLTRANSFERASE |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.1254
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT2G16740 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.2112
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.1134
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.1613
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.1233
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G37540 | PredictedAffinity Capture-MS | FSW = 0.3276
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT3G05540 | PredictedAffinity Capture-MS | FSW = 0.0819
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK) |
AT1G53900 | Predictedtwo hybridReconstituted ComplexAffinity Capture-Western | FSW = 0.1089
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT4G11330 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1357
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3273
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT4G32850 | PredictedAffinity Capture-MS | FSW = 0.0324
| Unknown | NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.2144
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.2767
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.2024
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.0835
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.3452
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT1G25410 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.0445
| Unknown | ATIPT6 ATP BINDING / ADENYLATE DIMETHYLALLYLTRANSFERASE/ TRNA ISOPENTENYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454