Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G19390 - ( cysteine proteinase putative / thiol protease putative )

4 Proteins interacs with AT3G19390
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G21750

Experimental

two hybrid

Reconstituted Complex

in vitro

FSW = 0.2368

Unknown

ATPDIL1-1 (PDI-LIKE 1-1) PROTEIN DISULFIDE ISOMERASE
AT4G26080

Experimental

interaction detection method

Affinity Capture-MS

FSW = 0.0672

Unknown

ABI1 (ABA INSENSITIVE 1) CALCIUM ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G47128

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2455

Unknown

RD21 (RESPONSIVE TO DEHYDRATION 21) CYSTEINE-TYPE ENDOPEPTIDASE/ CYSTEINE-TYPE PEPTIDASE
AT1G09850

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1303

Unknown

XBCP3 (XYLEM BARK CYSTEINE PEPTIDASE 3) CYSTEINE-TYPE ENDOPEPTIDASE/ CYSTEINE-TYPE PEPTIDASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454