Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G19720 - ( ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5) GTP binding / GTPase )

9 Proteins interacs with AT3G19720
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G33650

Experimental

Affinity Capture-Western

FSW = 0.0220

Unknown

DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT2G45740

Experimental

Affinity Capture-Western

protein complementation assay

FSW = 0.3607

Unknown

PEX11D
AT2G14120

Experimental

Affinity Capture-Western

FSW = 0.0424

Unknown

DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT5G12390

Experimental

Affinity Capture-Western

FSW = 0.1113

Unknown

FIS1B (FISSION 1B) BINDING
AT3G47430

Experimental

Affinity Capture-Western

protein complementation assay

FSW = 0.1641

Unknown

PEX11B
AT1G01820

Experimental

Affinity Capture-Western

protein complementation assay

FSW = 0.3607

Unknown

PEX11C (PEROXIN 11C)
AT3G61070

Experimental

Affinity Capture-Western

FSW = 0.1696

Unknown

PEX11E
AT3G57090

Experimental

protein complementation assay

FSW = 0.1641

Unknown

BIGYIN BINDING
AT1G47750

Experimental

protein complementation assay

FSW = 0.1641

Unknown

PEX11A (PEROXIN 11A)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454