Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G19840 - ( FF domain-containing protein / WW domain-containing protein )
45 Proteins interacs with AT3G19840| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G02500
   | PredictedAffinity Capture-MS | FSW = 0.0392
| Class C:nucleus | HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING |
| AT5G28540
| Predictedin vitro | FSW = 0.0454
| Class C:nucleus | BIP1 ATP BINDING |
| AT5G42020
| PredictedAffinity Capture-MS | FSW = 0.0676
| Class C:nucleus | BIP2 ATP BINDING |
| AT1G61000
| Predictedtwo hybrid | FSW = 0.0115
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK) |
| AT4G02840
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3432
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT1G09760
| PredictedAffinity Capture-MS | FSW = 0.2921
| Class C:nucleus | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
| AT5G64270
| PredictedAffinity Capture-MSin vitro | FSW = 0.2178
| Class C:nucleus | SPLICING FACTOR PUTATIVE |
| AT2G18510
| PredictedAffinity Capture-MSin vitro | FSW = 0.0998
| Class C:nucleus | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT2G47640
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1688
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT3G50670
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1257
| Class C:nucleus | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT5G66010
| PredictedAffinity Capture-MS | FSW = 0.0459
| Class C:nucleus | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT4G30220
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2447
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
| AT2G23930
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2960
| Class C:nucleus | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
| AT1G02840
| PredictedAffinity Capture-MSin vitroCo-expression | FSW = 0.0320
| Class C:nucleus | SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT1G20580
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2962
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT2G28910
| Predictedtwo hybrid | FSW = 0.0133
| Class C:nucleus | CXIP4 (CAX INTERACTING PROTEIN 4) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT1G65470
| PredictedAffinity Capture-MS | FSW = 0.0120
| Class C:nucleus | FAS1 (FASCIATA 1) HISTONE BINDING |
| AT4G30330
| PredictedAffinity Capture-MSSynthetic LethalityAffinity Capture-MS | FSW = 0.2501
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT3G12580
| Predictedin vitro | FSW = 0.0334
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
| AT1G80070
| Predictedtwo hybrid | FSW = 0.2372
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
| AT3G52380
| PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | CP33 RNA BINDING |
| AT2G33340
| PredictedCo-purification | FSW = 0.2130
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT4G35800
| Predictedin vivoin vivoin vitroin vitroReconstituted ComplexCo-expression | FSW = 0.0050
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT1G79920
| PredictedAffinity Capture-MS | FSW = 0.0545
| Unknown | ATP BINDING |
| AT1G79930
| PredictedAffinity Capture-MS | FSW = 0.0237
| Unknown | HSP91 ATP BINDING |
| AT5G02490
| PredictedAffinity Capture-MS | FSW = 0.0198
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
| AT5G64390
| PredictedAffinity Capture-MSin vitro | FSW = 0.0211
| Unknown | HEN4 (HUA ENHANCER 4) RNA BINDING / NUCLEIC ACID BINDING |
| AT3G12280
| PredictedPhenotypic Enhancement | FSW = 0.0044
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
| AT1G14640
| PredictedAffinity Capture-MS | FSW = 0.2544
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
| AT1G14650
| PredictedAffinity Capture-MSin vitroCo-expression | FSW = 0.0429
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN / UBIQUITIN FAMILY PROTEIN |
| AT1G60900
| PredictedAffinity Capture-MSin vitro | FSW = 0.0459
| Unknown | U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT PUTATIVE |
| AT3G08970
| PredictedAffinity Capture-MSin vitro | FSW = 0.0833
| Unknown | ATERDJ3A OXIDOREDUCTASE |
| AT4G02430
| PredictedAffinity Capture-MS | FSW = 0.0582
| Unknown | PRE-MRNA SPLICING FACTOR PUTATIVE / SR1 PROTEIN PUTATIVE |
| AT4G21660
| PredictedAffinity Capture-MSin vitro | FSW = 0.2852
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
| AT4G36690
| PredictedAffinity Capture-MS | FSW = 0.0654
| Unknown | ATU2AF65A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT5G06160
| PredictedAffinity Capture-MS | FSW = 0.2496
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT1G49760
| PredictedAffinity Capture-MS | FSW = 0.0601
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
| AT3G03110
| PredictedSynthetic Lethality | FSW = 0.0094
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
| AT3G03340
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2380
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
| AT5G14050
| PredictedAffinity Capture-MS | FSW = 0.0056
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G41770
| PredictedReconstituted Complextwo hybrid | FSW = 0.1739
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
| AT5G51300
| PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.1097
| Unknown | SPLICING FACTOR-RELATED |
| AT3G55220
| PredictedAffinity Capture-MS | FSW = 0.3321
| Unknown | SPLICING FACTOR PUTATIVE |
| AT5G46400
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4235
| Unknown | PRP39-2 |
| AT1G45100
| Predictedin vitro | FSW = 0.0667
| Unknown | POLYADENYLATE-BINDING PROTEIN PUTATIVE / PABP PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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