Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G19930 - ( STP4 (SUGAR TRANSPORTER 4) carbohydrate transmembrane transporter/ monosaccharide transmembrane transporter/ sucrosehydrogen symporter/ sugarhydrogen symporter )
46 Proteins interacs with AT3G19930Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G11260 | PredictedAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.0751
| Class C:plasma membrane | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G61520 | PredictedGene fusion methodCo-expression | FSW = 0.1012
| Class C:plasma membrane | HEXOSE TRANSPORTER PUTATIVE |
AT1G01620 | PredictedPhenotypic Enhancement | FSW = 0.0825
| Class C:plasma membrane | PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) WATER CHANNEL |
AT1G16030 | PredictedPhenotypic Enhancement | FSW = 0.1190
| Class C:plasma membrane | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT1G50310 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0422
| Class C:plasma membrane | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G26340 | PredictedPhenotypic Enhancement | FSW = 0.1299
| Class C:plasma membrane | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G23270 | PredictedGene fusion methodCo-expression | FSW = 0.1484
| Class C:plasma membrane | STP11 (SUGAR TRANSPORTER 11) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G39480 | PredictedPhenotypic Enhancement | FSW = 0.2316
| Class C:plasma membrane | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G62870 | Predictedsynthetic growth defecttwo hybrid | FSW = 0.0484
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G20800 | PredictedPhenotypic Enhancementinterologs mappingPhenotypic Enhancement | FSW = 0.1369
| Unknown | NDB4 (NAD(P)H DEHYDROGENASE B4) NADH DEHYDROGENASE |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.0702
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G55400 | PredictedPhenotypic Enhancement | FSW = 0.1191
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G54670 | PredictedSynthetic Rescue | FSW = 0.1015
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT5G17990 | PredictedPhenotypic Enhancement | FSW = 0.1790
| Unknown | TRP1 (TRYPTOPHAN BIOSYNTHESIS 1) ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE |
AT2G34450 | PredictedPhenotypic Enhancement | FSW = 0.3153
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT1G73690 | PredictedSynthetic Rescue | FSW = 0.1008
| Unknown | CDKD11 (CYCLIN-DEPENDENT KINASE D11) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G36170 | Predictedinterologs mapping | FSW = 0.0073
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT3G29800 | PredictedPhenotypic Enhancement | FSW = 0.3061
| Unknown | AAA-TYPE ATPASE FAMILY |
AT2G47510 | PredictedAffinity Capture-MS | FSW = 0.0054
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT1G29330 | PredictedPhenotypic Enhancement | FSW = 0.1295
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT2G47990 | Predictedinterologs mapping | FSW = 0.0144
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT4G39100 | PredictedPhenotypic Enhancement | FSW = 0.1775
| Unknown | SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR |
AT1G34460 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G49520 | PredictedPhenotypic Enhancement | FSW = 0.1994
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G55255 | PredictedPhenotypic Enhancement | FSW = 0.0339
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G61670 | PredictedPhenotypic Enhancement | FSW = 0.3506
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT1G71530 | PredictedPhenotypic Enhancement | FSW = 0.1071
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G76920 | PredictedPhenotypic Enhancement | FSW = 0.1481
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT2G23070 | PredictedPhenotypic Enhancement | FSW = 0.1053
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G24960 | PredictedPhenotypic Enhancement | FSW = 0.1771
| Unknown | UNKNOWN PROTEIN |
AT2G29190 | PredictedPhenotypic Enhancement | FSW = 0.2045
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
AT2G46620 | PredictedPhenotypic Suppression | FSW = 0.1255
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT3G06460 | PredictedPhenotypic Enhancement | FSW = 0.0938
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G09800 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.2380
| Unknown | PROTEIN BINDING |
AT1G55060 | Predictedinterologs mapping | FSW = 0.0131
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT4G27130 | Predictedsynthetic growth defect | FSW = 0.0335
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G19300 | PredictedPhenotypic Enhancement | FSW = 0.1484
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK) |
AT5G53120 | PredictedPhenotypic Enhancement | FSW = 0.3216
| Unknown | SPDS3 (SPERMIDINE SYNTHASE 3) SPERMIDINE SYNTHASE/ SPERMINE SYNTHASE |
AT5G57270 | PredictedPhenotypic Enhancement | FSW = 0.1815
| Unknown | UNKNOWN PROTEIN |
AT4G33950 | PredictedPhenotypic Enhancement | FSW = 0.2589
| Unknown | OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE |
AT4G36050 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0089
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G52200 | PredictedPhenotypic Enhancement | FSW = 0.3125
| Unknown | UNKNOWN PROTEIN |
AT5G57190 | PredictedPhenotypic Enhancement | FSW = 0.1574
| Unknown | PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE |
AT4G36670 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0776
| Unknown | MANNITOL TRANSPORTER PUTATIVE |
AT3G19940 | PredictedGene fusion methodCo-expression | FSW = 0.0442
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT2G18480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0799
| Unknown | MANNITOL TRANSPORTER PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454