Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G20010 - ( SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein )
31 Proteins interacs with AT3G20010| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G09770
   | Predictedin vitroin vivotwo hybridCo-expression | FSW = 0.0135
| Class C:nucleus | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
| AT4G07950
| PredictedPhenotypic Enhancement | FSW = 0.0168
| Class C:nucleus | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
| AT2G24490
| PredictedPhenotypic Enhancement | FSW = 0.0276
| Class C:nucleus | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
| AT3G12480
| Predictedtwo hybrid | FSW = 0.0257
| Class C:nucleus | NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR |
| AT3G12810
| PredictedPhenotypic Enhancement | FSW = 0.0866
| Class C:nucleus | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT5G55920
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0135
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
| AT1G05055
| PredictedPhenotypic Enhancement | FSW = 0.0271
| Class C:nucleus | GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
| AT2G36740
| PredictedPhenotypic Enhancement | FSW = 0.1251
| Class C:nucleus | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
| AT3G55620
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0095
| Class C:nucleus | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
| AT1G02680
| PredictedPhenotypic Enhancement | FSW = 0.0390
| Class C:nucleus | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
| AT2G43810
| PredictedPhenotypic Enhancement | FSW = 0.0750
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
| AT1G03330
| Predictedtwo hybridinteraction prediction | FSW = 0.0171
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
| AT3G02520
| PredictedPhenotypic Enhancement | FSW = 0.0300
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT5G60930
| Predictedin vivoCo-expression | FSW = 0.0941
| Unknown | CHROMOSOME-ASSOCIATED KINESIN PUTATIVE |
| AT2G31970
| PredictedPhenotypic Enhancement | FSW = 0.0254
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
| AT4G26840
| Predictedtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.0040
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT1G24706
| PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | UNKNOWN PROTEIN |
| AT1G29990
| PredictedPhenotypic Enhancement | FSW = 0.0479
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
| AT1G54140
| PredictedPhenotypic Enhancement | FSW = 0.0744
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
| AT1G63160
| PredictedPhenotypic Enhancement | FSW = 0.0632
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
| AT1G77470
| PredictedPhenotypic Enhancement | FSW = 0.0523
| Unknown | REPLICATION FACTOR C 36 KDA PUTATIVE |
| AT3G02820
| PredictedPhenotypic Enhancement | FSW = 0.0518
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
| AT3G10070
| PredictedPhenotypic Enhancement | FSW = 0.0529
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
| AT5G06160
| Predictedtwo hybridinteraction prediction | FSW = 0.0240
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT5G41700
| PredictedAffinity Capture-Western | FSW = 0.0444
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G22590
| PredictedPhenotypic Suppression | FSW = 0.0320
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
| AT5G13680
| PredictedPhenotypic Enhancement | FSW = 0.0429
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
| AT5G45600
| PredictedPhenotypic Enhancement | FSW = 0.1417
| Unknown | GAS41 PROTEIN BINDING |
| AT5G45900
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0214
| Unknown | APG7 (AUTOPHAGY 7) APG8 ACTIVATING ENZYME |
| AT5G40490
| Predictedin vivoCo-expression | FSW = 0.0317
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G15130
| Predictedtwo hybrid | FSW = 0.0224
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMPTAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71
This page takes 0.500 seconds to be build.
This page takes 0.500 seconds to be build.