Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G20630 - ( UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) ubiquitin-specific protease )
23 Proteins interacs with AT3G20630Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G23010 | PredictedAffinity Capture-MS | FSW = 0.0667
| Unknown | MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1) 2-ISOPROPYLMALATE SYNTHASE/ METHYLTHIOALKYLMALATE SYNTHASE |
AT1G18500 | PredictedAffinity Capture-MS | FSW = 0.0635
| Unknown | MAML-4 (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4) 2-ISOPROPYLMALATE SYNTHASE |
AT5G63980 | Predictedinteraction prediction | FSW = 0.0466
| Unknown | SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
AT2G36170 | PredictedAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0136
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT1G25420 | Predictedtwo hybridtwo hybrid | FSW = 0.0212
| Unknown | UNKNOWN PROTEIN |
AT4G29440 | Predictedtwo hybrid | FSW = 0.0395
| Unknown | UNKNOWN PROTEIN |
AT3G10910 | PredictedAffinity Capture-MS | FSW = 0.0410
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.0519
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT2G02760 | Predictedsynthetic growth defect | FSW = 0.0503
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.0625
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G11910 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT3G18860 | Predictedsynthetic growth defect | FSW = 0.0701
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G42660 | Predictedsynthetic growth defect | FSW = 0.0663
| Unknown | NUCLEOTIDE BINDING |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.0564
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G55310 | PredictedAffinity Capture-MS | FSW = 0.0479
| Unknown | TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I |
AT3G56150 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0272
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
AT4G10320 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0293
| Unknown | ISOLEUCYL-TRNA SYNTHETASE PUTATIVE / ISOLEUCINE--TRNA LIGASE PUTATIVE |
AT5G55300 | PredictedAffinity Capture-MS | FSW = 0.0317
| Unknown | TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I |
AT1G15780 | PredictedAffinity Capture-MS | FSW = 0.0193
| Unknown | UNKNOWN PROTEIN |
AT3G22860 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | TIF3C2 TRANSLATION INITIATION FACTOR |
AT1G14400 | Predictedsynthetic growth defectEnriched domain pairCo-expression | FSW = 0.0433
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT5G09290 | Predictedtwo hybrid | FSW = 0.0533
| Unknown | 3(2)5-BISPHOSPHATE NUCLEOTIDASE PUTATIVE / INOSITOL POLYPHOSPHATE 1-PHOSPHATASE PUTATIVE |
AT5G61150 | Predictedinteraction predictiontwo hybrid | FSW = 0.0071
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454