Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G20740 - ( FIE (FERTILIZATION-INDEPENDENT ENDOSPERM) nucleotide binding / transcription factor/ transcription regulator )
25 Proteins interacs with AT3G20740Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G02580 | Experimentaltwo hybridReconstituted Complextwo hybridtwo hybridpull downpull downmolecular sievinginteraction detection methodReconstituted Complexco-fractionationCo-fractionationprotein complementation assayAffinity Capture-Western | FSW = 0.2481
| Class A:nucleusClass B:cytosol | MEA (MEDEA) SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT2G19080 | Experimental | FSW = 0.0776
| Class B:unclearnucleusmitochondrionClass D:cytosol (p = 0.67) | METAXIN-RELATED |
AT5G58230 | Experimentalmolecular sievingpull downAffinity Capture-WesternReconstituted Complexcoimmunoprecipitation | FSW = 0.0672
| Class B:plastidnucleus | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT2G23380 | Experimentalpull downinteraction detection methodtwo hybridReconstituted Complex | FSW = 0.1731
| Class D:plastid (p = 0.78) | CLF (CURLY LEAF) TRANSCRIPTION FACTOR |
AT4G16845 | ExperimentalcoimmunoprecipitationAffinity Capture-Western | FSW = 0.1504
| Unknown | VRN2 (REDUCED VERNALIZATION RESPONSE 2) TRANSCRIPTION FACTOR |
AT4G02020 | Experimentalinteraction detection method | FSW = 0.2924
| Unknown | SWN (SWINGER) TRANSCRIPTION FACTOR |
AT3G24650 | Experimental | FSW = 0.0408
| Unknown | ABI3 (ABA INSENSITIVE 3) DNA BINDING / BASAL TRANSCRIPTION REPRESSOR/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT3G12280 | Experimentalpull downReconstituted Complex | FSW = 0.0203
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT2G22640 | Experimental | FSW = 0.0381
| Unknown | BRK1 (BRICK1) |
ETG5925 | ExperimentalReconstituted Complextwo hybrid | FSW = 0.1429
| Unknown | BRK1 (BRICK1) |
AT5G04340 | PredictedPhenotypic EnhancementPhenotypic Suppression | FSW = 0.0664
| Class C:nucleus | ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT4G38130 | Predictedco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexCo-purification | FSW = 0.0612
| Class C:nucleus | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT2G01320 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0593
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT5G51230 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.1021
| Unknown | EMF2 (EMBRYONIC FLOWER 2) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G27740 | Predictedtwo hybrid | FSW = 0.0092
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G10070 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0136
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT3G61740 | PredictedPhenotypic Suppression | FSW = 0.0200
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G42400 | PredictedPhenotypic Suppression | FSW = 0.1290
| Unknown | SDG25 (SET DOMAIN PROTEIN 25) |
AT3G23060 | PredictedPhenotypic Suppression | FSW = 0.1078
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G30550 | PredictedReconstituted Complextwo hybrid | FSW = 0.1429
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS WW DOMAIN-CONTAINING PROTEIN (TAIRAT1G452312) HAS 891 BLAST HITS TO 591 PROTEINS IN 275 SPECIES ARCHAE - 68 BACTERIA - 248 METAZOA - 211 FUNGI - 176 PLANTS - 45 VIRUSES - 3 OTHER EUKARYOTES - 140 (SOURCE NCBI BLINK) |
AT1G45231 | PredictedReconstituted Complextwo hybrid | FSW = 0.0635
| Unknown | WW DOMAIN-CONTAINING PROTEIN |
AT5G10220 | Predictedtwo hybrid | FSW = 0.0517
| Unknown | ANN6 (ANNEXIN ARABIDOPSIS 6) CALCIUM ION BINDING / CALCIUM-DEPENDENT PHOSPHOLIPID BINDING |
AT5G47790 | PredictedAffinity Capture-Westerntwo hybridReconstituted Complex | FSW = 0.0750
| Unknown | FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN |
AT5G59160 | PredictedReconstituted Complex | FSW = 0.0609
| Unknown | TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G26800 | PredictedGene fusion method | FSW = 0.0357
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454