Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G20800 - ( rcd1-like cell differentiation protein putative )

40 Proteins interacs with AT3G20800
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G45130

Predicted

Phenotypic Enhancement

FSW = 0.0668

Unknown

RHA1 (RAB HOMOLOG 1) GTP BINDING
AT3G22110

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.0632

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G61960

Predicted

interologs mapping

FSW = 0.0216

Unknown

AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1) RNA BINDING / PROTEIN BINDING
AT3G17820

Predicted

Affinity Capture-MS

FSW = 0.0545

Unknown

ATGSKB6 COPPER ION BINDING / GLUTAMATE-AMMONIA LIGASE
AT1G48470

Predicted

Affinity Capture-MS

FSW = 0.0682

Unknown

GLN15 (GLUTAMINE SYNTHETASE 15) GLUTAMATE-AMMONIA LIGASE
AT5G63110

Predicted

Phenotypic Enhancement

FSW = 0.0913

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT1G73230

Predicted

two hybrid

FSW = 0.1105

Unknown

NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN
AT3G12110

Predicted

Phenotypic Enhancement

FSW = 0.0466

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.0646

Unknown

SEC22 TRANSPORTER
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0172

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G10330

Predicted

interaction prediction

FSW = 0.0203

Unknown

TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT5G59710

Predicted

interaction prediction

FSW = 0.1332

Unknown

VIP2 (VIRE2 INTERACTING PROTEIN2) PROTEIN BINDING / TRANSCRIPTION REGULATOR
AT2G41630

Predicted

two hybrid

FSW = 0.0185

Unknown

TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT1G02080Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

interaction prediction

FSW = 0.1551

Unknown

TRANSCRIPTIONAL REGULATOR-RELATED
AT1G06790

Predicted

Phenotypic Enhancement

FSW = 0.0298

Unknown

RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G07705

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1620

Unknown

TRANSCRIPTION REGULATOR
AT1G08780

Predicted

Phenotypic Enhancement

FSW = 0.0857

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G51710

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.0332

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G74250

Predicted

Phenotypic Enhancement

FSW = 0.0284

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT3G18860

Predicted

Phenotypic Enhancement

FSW = 0.0655

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G29990

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0741

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G32130

Predicted

Phenotypic Enhancement

FSW = 0.0729

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT3G58560

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

FSW = 0.0835

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT5G10960

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0839

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G23290

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0642

Unknown

PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G49510

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0739

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT3G22142

Predicted

Phenotypic Enhancement

FSW = 0.1825

Unknown

STRUCTURAL CONSTITUENT OF CELL WALL
AT3G22480

Predicted

Phenotypic Enhancement

FSW = 0.0787

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G45630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

FSW = 0.2009

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G54380

Predicted

Phenotypic Suppression

FSW = 0.1025

Unknown

SAC3/GANP FAMILY PROTEIN
AT4G34100

Predicted

Synthetic Lethality

FSW = 0.0431

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT5G10260

Predicted

Phenotypic Enhancement

FSW = 0.0809

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10390Predicted

Phenotypic Enhancement

FSW = 0.0109

Unknown

HISTONE H3
AT5G18230

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

FSW = 0.2264

Unknown

TRANSCRIPTION REGULATOR NOT2/NOT3/NOT5 FAMILY PROTEIN
AT5G42000

Predicted

Phenotypic Enhancement

FSW = 0.0537

Unknown

ORMDL FAMILY PROTEIN
AT5G48120

Predicted

Phenotypic Enhancement

FSW = 0.1032

Unknown

BINDING
AT1G15920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0655

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT2G32070

Predicted

interaction prediction

FSW = 0.1458

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G12980

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0545

Unknown

RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE
AT2G32550

Predicted

Phylogenetic profile method

FSW = 0.0429

Unknown

RCD1-LIKE CELL DIFFERENTIATION FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454