Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G20970 - ( NFU4 structural molecule )
66 Proteins interacs with AT3G20970Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.0449
| Class C:mitochondrion | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.1326
| Class C:mitochondrion | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT2G39795 | PredictedAffinity Capture-MS | FSW = 0.0759
| Class C:mitochondrion | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT4G22220 | Predictedsynthetic growth defect | FSW = 0.0157
| Class C:mitochondrion | ISU1 STRUCTURAL MOLECULE |
AT3G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1166
| Class C:mitochondrion | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT5G19320 | PredictedReconstituted Complex | FSW = 0.0135
| Unknown | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR |
AT3G08710 | PredictedSynthetic Rescue | FSW = 0.0321
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT4G21980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0340
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT2G09990 | PredictedAffinity Capture-MS | FSW = 0.0029
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
AT2G06850 | PredictedAffinity Capture-MSAffinity Capture-MSinterologs mappingAffinity Capture-MS | FSW = 0.0939
| Unknown | EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) HYDROLASE ACTING ON GLYCOSYL BONDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT2G43030 | PredictedAffinity Capture-MS | FSW = 0.0608
| Unknown | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT1G10070 | Predictedbiochemical | FSW = 0.0242
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
ATCG00160 | PredictedAffinity Capture-MS | FSW = 0.0045
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
AT1G27970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1158
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT3G13560 | PredictedAffinity Capture-MS | FSW = 0.0474
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT4G36490 | PredictedAffinity Capture-MS | FSW = 0.0674
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT5G43370 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0845
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G17760 | PredictedAffinity Capture-MS | FSW = 0.0142
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT5G23900 | PredictedAffinity Capture-MS | FSW = 0.1088
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT3G16780 | PredictedAffinity Capture-MS | FSW = 0.0136
| Unknown | 60S RIBOSOMAL PROTEIN L19 (RPL19B) |
AT5G12350 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.1105
| Unknown | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
AT4G36860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1343
| Unknown | ZINC ION BINDING |
AT2G20580 | PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G79020 | Predictedinterologs mapping | FSW = 0.0196
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT3G44530 | Predictedin vitrotwo hybrid | FSW = 0.0032
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G13650 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0885
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G33710 | PredictedColocalization | FSW = 0.0526
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G39200 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0882
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.1365
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT4G27070 | PredictedAffinity Capture-MS | FSW = 0.1383
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT1G77990 | PredictedAffinity Capture-MS | FSW = 0.0970
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT3G14290 | PredictedAffinity Capture-MS | FSW = 0.0054
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G17190 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0432
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G09270 | PredictedAffinity Capture-MS | FSW = 0.0541
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G24706 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1201
| Unknown | UNKNOWN PROTEIN |
AT1G33090 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethalityinterologs mappingSynthetic Rescue | FSW = 0.2113
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.1545
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.0774
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0667
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G20635 | Predictedtwo hybridSynthetic Rescue | FSW = 0.0250
| Unknown | ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.0753
| Unknown | XIF MOTOR |
AT2G35390 | Predictedtwo hybridSynthetic Lethality | FSW = 0.0923
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G43360 | PredictedAffinity Capture-Western | FSW = 0.1569
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginterologs mappingAffinity Capture-WesternAffinity Capture-Westerninterologs mappingAffinity Capture-MS | FSW = 0.0927
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
AT3G05540 | PredictedAffinity Capture-MS | FSW = 0.0509
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK) |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.1335
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.0807
| Unknown | LPAT5 ACYLTRANSFERASE |
AT1G10210 | Predictedbiochemical | FSW = 0.0183
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G48605 | PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0392
| Unknown | ATHAL3B FMN BINDING / ELECTRON CARRIER/ PHOSPHOPANTOTHENOYLCYSTEINE DECARBOXYLASE |
AT1G54560 | Predictedbiochemical | FSW = 0.0066
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT2G03410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1236
| Unknown | MO25 FAMILY PROTEIN |
AT2G15230 | PredictedSynthetic Lethality | FSW = 0.0322
| Unknown | ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1) GALACTOLIPASE/ HYDROLASE/ PHOSPHOLIPASE/ TRIACYLGLYCEROL LIPASE |
AT2G16710 | PredictedAffinity Capture-MS | FSW = 0.0198
| Unknown | HESB-LIKE DOMAIN-CONTAINING PROTEIN |
AT4G27960 | PredictedAffinity Capture-MS | FSW = 0.0155
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT3G50780 | PredictedAffinity Capture-MS | FSW = 0.0839
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT3G54150 | PredictedAffinity Capture-MS | FSW = 0.0913
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT4G21800 | PredictedAffinity Capture-MS | FSW = 0.0675
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT4G26230 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0922
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.0869
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G09390 | PredictedAffinity Capture-MS | FSW = 0.0406
| Unknown | CD2-BINDING PROTEIN-RELATED |
AT5G13860 | PredictedAffinity Capture-MS | FSW = 0.0819
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.0305
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1248
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G24840 | PredictedAffinity Capture-MS | FSW = 0.0217
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G57890 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1241
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT5G61010 | PredictedAffinity Capture-MS | FSW = 0.0775
| Unknown | ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454