Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G21350 - ( RNA polymerase transcriptional regulation mediator-related )
49 Proteins interacs with AT3G21350Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G28540 | Experimental | FSW = 0.0237
| Unknown | BIP1 ATP BINDING |
AT3G10690 | Experimental | FSW = 0.0140
| Unknown | DNA GYRASE SUBUNIT A FAMILY PROTEIN |
AT4G25630 | Experimental | FSW = 0.0037
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT2G38250 | Experimental | FSW = 0.0769
| Unknown | DNA-BINDING PROTEIN-RELATED |
AT3G57660 | Experimental | FSW = 0.0702
| Unknown | NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING |
AT5G64680 | Experimental | FSW = 0.0769
| Unknown | UNKNOWN PROTEIN |
AT3G25940 | Experimental | FSW = 0.0673
| Unknown | TRANSCRIPTION FACTOR S-II (TFIIS) DOMAIN-CONTAINING PROTEIN |
AT1G25540 | Experimental | FSW = 0.0615
| Unknown | PFT1 (PHYTOCHROME AND FLOWERING TIME 1) TRANSCRIPTION COACTIVATOR |
AT4G25210 | Experimental | FSW = 0.0192
| Unknown | TRANSCRIPTION REGULATOR |
AT1G60850 | Experimental | FSW = 0.0697
| Unknown | ATRPAC42 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT5G19910 | Experimental | FSW = 0.0485
| Unknown | SOH1 FAMILY PROTEIN |
AT2G29540 | Experimental | FSW = 0.0313
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT5G03220 | Experimental | FSW = 0.1373
| Unknown | TRANSCRIPTIONAL CO-ACTIVATOR-RELATED |
AT1G11760 | Experimental | FSW = 0.1132
| Unknown | UNKNOWN PROTEIN |
AT5G42060 | Experimental | FSW = 0.0615
| Unknown | UNKNOWN PROTEIN |
AT2G03070 | Experimental | FSW = 0.0769
| Unknown | UNKNOWN PROTEIN |
AT3G01435 | Experimental | FSW = 0.0769
| Unknown | EXPRESSED PROTEIN |
AT5G02850 | Experimental | FSW = 0.0769
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT5G41910 | Experimental | FSW = 0.3103
| Unknown | RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED |
AT1G26665 | Experimental | FSW = 0.0790
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED (TAIRAT5G419101) HAS 223 BLAST HITS TO 223 PROTEINS IN 105 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 112 FUNGI - 83 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 4 (SOURCE NCBI BLINK) |
AT1G55080 | Experimental | FSW = 0.0769
| Unknown | UNKNOWN PROTEIN |
AT3G04740 | Experimental | FSW = 0.1132
| Unknown | SWP (STRUWWELPETER) |
AT2G28230 | Experimental | FSW = 0.0769
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S TATA-BINDING RELATED FACTOR (INTERPROIPR013921) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G090701) HAS 43 BLAST HITS TO 43 PROTEINS IN 21 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 22 FUNGI - 0 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 3 (SOURCE NCBI BLINK) |
AT2G22370 | Experimental | FSW = 0.0849
| Unknown | UNKNOWN PROTEIN |
AT5G20170 | Experimental | FSW = 0.0769
| Unknown | UNKNOWN PROTEIN |
AT1G16430 | Experimental | FSW = 0.0769
| Unknown | SURFEIT LOCUS PROTEIN 5 FAMILY PROTEIN / SURF5 FAMILY PROTEIN |
AT4G04780 | Experimental | FSW = 0.1132
| Unknown | MED21 (MEDIATOR 21) |
AT3G52860 | Experimental | FSW = 0.0769
| Unknown | UNKNOWN PROTEIN |
AT5G41010 | Experimental | FSW = 0.1051
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G59600 | Experimental | FSW = 0.0912
| Unknown | NRPB8B DNA-DIRECTED RNA POLYMERASE |
AT5G12230 | Experimental | FSW = 0.0769
| Unknown | UNKNOWN PROTEIN |
AT1G54250 | Experimental | FSW = 0.1389
| Unknown | NRPB8A DNA-DIRECTED RNA POLYMERASE |
AT3G09180 | Experimental | FSW = 0.0769
| Unknown | UNKNOWN PROTEIN |
AT3G23590 | Experimental | FSW = 0.0453
| Unknown | RFR1 (REF4-RELATED 1) |
AT1G31360 | Experimental | FSW = 0.0342
| Unknown | RECQL2 (ARABIDOPSIS RECQ HELICASE L2) 3-5 DNA HELICASE/ ATP-DEPENDENT HELICASE/ FOUR-WAY JUNCTION HELICASE/ PROTEIN BINDING |
AT5G67240 | Experimental | FSW = 0.0769
| Unknown | SDN3 (SMALL RNA DEGRADING NUCLEASE 3) EXONUCLEASE/ NUCLEIC ACID BINDING |
AT5G63480 | Experimental | FSW = 0.0769
| Unknown | UNKNOWN PROTEIN |
AT4G35800 | PredictedAffinity Capture-WesternbiochemicalCo-purification | FSW = 0.0770
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G10330 | Predictedinteraction prediction | FSW = 0.0357
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT2G41630 | Predictedtwo hybrid | FSW = 0.0233
| Unknown | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT4G21710 | PredictedAffinity Capture-MS | FSW = 0.0862
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G15400 | PredictedAffinity Capture-Western | FSW = 0.1121
| Unknown | NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT5G20850 | PredictedAffinity Capture-MS | FSW = 0.0059
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G07950 | PredictedAffinity Capture-Western | FSW = 0.0617
| Unknown | SURFEIT LOCUS PROTEIN 5 FAMILY PROTEIN / SURF5 FAMILY PROTEIN |
AT5G48630 | Predictedin vitro | FSW = 0.0504
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G63610 | Predictedin vitroAffinity Capture-MS | FSW = 0.0378
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G28300 | PredictedAffinity Capture-MS | FSW = 0.0367
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT5G01230 | Predictedtwo hybridinteraction prediction | FSW = 0.0205
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
AT2G44580 | Predictedtwo hybridtwo hybridinteraction prediction | FSW = 0.0055
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454