Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G21350 - ( RNA polymerase transcriptional regulation mediator-related )

49 Proteins interacs with AT3G21350
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G28540

Experimental

FSW = 0.0237

Unknown

BIP1 ATP BINDING
AT3G10690

Experimental

FSW = 0.0140

Unknown

DNA GYRASE SUBUNIT A FAMILY PROTEIN
AT4G25630

Experimental

FSW = 0.0037

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT2G38250

Experimental

FSW = 0.0769

Unknown

DNA-BINDING PROTEIN-RELATED
AT3G57660

Experimental

FSW = 0.0702

Unknown

NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING
AT5G64680

Experimental

FSW = 0.0769

Unknown

UNKNOWN PROTEIN
AT3G25940

Experimental

FSW = 0.0673

Unknown

TRANSCRIPTION FACTOR S-II (TFIIS) DOMAIN-CONTAINING PROTEIN
AT1G25540

Experimental

FSW = 0.0615

Unknown

PFT1 (PHYTOCHROME AND FLOWERING TIME 1) TRANSCRIPTION COACTIVATOR
AT4G25210

Experimental

FSW = 0.0192

Unknown

TRANSCRIPTION REGULATOR
AT1G60850

Experimental

FSW = 0.0697

Unknown

ATRPAC42 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT5G19910

Experimental

FSW = 0.0485

Unknown

SOH1 FAMILY PROTEIN
AT2G29540

Experimental

FSW = 0.0313

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT5G03220

Experimental

FSW = 0.1373

Unknown

TRANSCRIPTIONAL CO-ACTIVATOR-RELATED
AT1G11760

Experimental

FSW = 0.1132

Unknown

UNKNOWN PROTEIN
AT5G42060

Experimental

FSW = 0.0615

Unknown

UNKNOWN PROTEIN
AT2G03070

Experimental

FSW = 0.0769

Unknown

UNKNOWN PROTEIN
AT3G01435

Experimental

FSW = 0.0769

Unknown

EXPRESSED PROTEIN
AT5G02850

Experimental

FSW = 0.0769

Unknown

HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT5G41910

Experimental

FSW = 0.3103

Unknown

RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED
AT1G26665

Experimental

FSW = 0.0790

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED (TAIRAT5G419101) HAS 223 BLAST HITS TO 223 PROTEINS IN 105 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 112 FUNGI - 83 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 4 (SOURCE NCBI BLINK)
AT1G55080

Experimental

FSW = 0.0769

Unknown

UNKNOWN PROTEIN
AT3G04740

Experimental

FSW = 0.1132

Unknown

SWP (STRUWWELPETER)
AT2G28230

Experimental

FSW = 0.0769

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S TATA-BINDING RELATED FACTOR (INTERPROIPR013921) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G090701) HAS 43 BLAST HITS TO 43 PROTEINS IN 21 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 22 FUNGI - 0 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 3 (SOURCE NCBI BLINK)
AT2G22370

Experimental

FSW = 0.0849

Unknown

UNKNOWN PROTEIN
AT5G20170

Experimental

FSW = 0.0769

Unknown

UNKNOWN PROTEIN
AT1G16430

Experimental

FSW = 0.0769

Unknown

SURFEIT LOCUS PROTEIN 5 FAMILY PROTEIN / SURF5 FAMILY PROTEIN
AT4G04780

Experimental

FSW = 0.1132

Unknown

MED21 (MEDIATOR 21)
AT3G52860

Experimental

FSW = 0.0769

Unknown

UNKNOWN PROTEIN
AT5G41010

Experimental

FSW = 0.1051

Unknown

NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G59600

Experimental

FSW = 0.0912

Unknown

NRPB8B DNA-DIRECTED RNA POLYMERASE
AT5G12230

Experimental

FSW = 0.0769

Unknown

UNKNOWN PROTEIN
AT1G54250

Experimental

FSW = 0.1389

Unknown

NRPB8A DNA-DIRECTED RNA POLYMERASE
AT3G09180

Experimental

FSW = 0.0769

Unknown

UNKNOWN PROTEIN
AT3G23590

Experimental

FSW = 0.0453

Unknown

RFR1 (REF4-RELATED 1)
AT1G31360

Experimental

FSW = 0.0342

Unknown

RECQL2 (ARABIDOPSIS RECQ HELICASE L2) 3-5 DNA HELICASE/ ATP-DEPENDENT HELICASE/ FOUR-WAY JUNCTION HELICASE/ PROTEIN BINDING
AT5G67240

Experimental

FSW = 0.0769

Unknown

SDN3 (SMALL RNA DEGRADING NUCLEASE 3) EXONUCLEASE/ NUCLEIC ACID BINDING
AT5G63480

Experimental

FSW = 0.0769

Unknown

UNKNOWN PROTEIN
AT4G35800

Predicted

Affinity Capture-Western

biochemical

Co-purification

FSW = 0.0770

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G10330

Predicted

interaction prediction

FSW = 0.0357

Unknown

TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT2G41630

Predicted

two hybrid

FSW = 0.0233

Unknown

TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT4G21710

Predicted

Affinity Capture-MS

FSW = 0.0862

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT2G15400

Predicted

Affinity Capture-Western

FSW = 0.1121

Unknown

NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT5G20850

Predicted

Affinity Capture-MS

FSW = 0.0059

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G07950

Predicted

Affinity Capture-Western

FSW = 0.0617

Unknown

SURFEIT LOCUS PROTEIN 5 FAMILY PROTEIN / SURF5 FAMILY PROTEIN
AT5G48630

Predicted

in vitro

FSW = 0.0504

Unknown

CYCLIN FAMILY PROTEIN
AT5G63610

Predicted

in vitro

Affinity Capture-MS

FSW = 0.0378

Unknown

CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G28300

Predicted

Affinity Capture-MS

FSW = 0.0367

Unknown

HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT5G01230

Predicted

two hybrid

interaction prediction

FSW = 0.0205

Unknown

FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN
AT2G44580

Predicted

two hybrid

two hybrid

interaction prediction

FSW = 0.0055

Unknown

PROTEIN BINDING / ZINC ION BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454