Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G21620 - ( early-responsive to dehydration protein-related / ERD protein-related )
9 Proteins interacs with AT3G21620Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G43160 | Predictedtwo hybrid | FSW = 0.1109
| Class C:plasma membrane | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT3G62870 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.0090
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G49630 | Predictedco-fractionationCo-fractionation | FSW = 0.0656
| Unknown | ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ METALLOPEPTIDASE/ ZINC ION BINDING |
AT4G34430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0439
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G05180 | PredictedSynthetic Rescue | FSW = 0.0125
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT2G43190 | Predictedtwo hybrid | FSW = 0.0361
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
AT3G62960 | Predictedtwo hybrid | FSW = 0.1203
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT5G61010 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0565
| Unknown | ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) PROTEIN BINDING |
AT4G15430 | PredictedGene fusion methodCo-expression | FSW = 0.1262
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM MEMBRANE EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF221 (INTERPROIPR003864) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED (TAIRAT3G216201) HAS 923 BLAST HITS TO 821 PROTEINS IN 135 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 164 FUNGI - 446 PLANTS - 258 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454