Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G21640 - ( TWD1 (TWISTED DWARF 1) FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase )

7 Proteins interacs with AT3G21640
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G30190

Experimental

Reconstituted Complex

FSW = 0.0462

Class D:

cytosol (p = 0.67)

 AHA2 ATPASE/ HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM
AT1G30400

Experimental

affinity technology

Affinity Capture-Western

pull down

two hybrid

Reconstituted Complex

co-fractionation

Co-fractionation

in vitro

FSW = 0.0933

Class D:

cytosol (p = 0.67)

 MRP1 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / XENOBIOTIC-TRANSPORTING ATPASE
AT2G34660

Experimental

two hybrid

FSW = 0.2307

Class D:

cytosol (p = 0.67)

 ATMRP2 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G52640

Experimental

FSW = 0.0032

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

 ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G28860

Experimental

two hybrid

FSW = 0.1109

Unknown

 ABCB19 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / AUXIN EFFLUX TRANSMEMBRANE TRANSPORTER
AT2G36910

Experimental

pull down

two hybrid

Reconstituted Complex

co-fractionation

Co-fractionation

Co-purification

FSW = 0.1177

Unknown

 ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / AUXIN EFFLUX TRANSMEMBRANE TRANSPORTER/ CALMODULIN BINDING
AT1G27940

Experimental

FSW = 0.1296

Unknown

 PGP13 (P-GLYCOPROTEIN 13) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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