Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G22150 - ( pentatricopeptide (PPR) repeat-containing protein )

8 Proteins interacs with AT3G22150
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G19720

Predicted

Phylogenetic profile method

FSW = 0.4372

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT3G01610

Predicted

Gene fusion method

FSW = 0.0600

Unknown

CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G37500

Predicted

Gene fusion method

Co-expression

FSW = 0.1861

Unknown

GORK (GATED OUTWARDLY-RECTIFYING K+ CHANNEL) CYCLIC NUCLEOTIDE BINDING / INWARD RECTIFIER POTASSIUM CHANNEL/ OUTWARD RECTIFIER POTASSIUM CHANNEL
AT1G18485

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3737

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G11290

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4372

Unknown

CRR22 (CHLORORESPIRATORY REDUCTION22) ENDONUCLEASE
AT2G17210

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3927

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT3G49170

Predicted

Phylogenetic profile method

FSW = 0.3737

Unknown

EMB2261 (EMBRYO DEFECTIVE 2261)
AT1G11280

Predicted

Gene fusion method

FSW = 0.1233

Unknown

S-LOCUS PROTEIN KINASE PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454