Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G22290 - ( unknown protein )
121 Proteins interacs with AT3G22290Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G47520 | Predictedsynthetic growth defect | FSW = 0.0466
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT4G16660 | PredictedSynthetic Lethality | FSW = 0.2563
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT1G20260 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2831
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G66680 | Predictedsynthetic growth defect | FSW = 0.0077
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT3G09440 | PredictedPhenotypic Enhancement | FSW = 0.0796
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3) |
AT3G28715 | Predictedsynthetic growth defect | FSW = 0.0641
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT2G45170 | Predictedsynthetic growth defect | FSW = 0.1977
| Unknown | ATATG8E MICROTUBULE BINDING |
AT1G36050 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0176
| Unknown | UNKNOWN PROTEIN |
AT1G74560 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.3793
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT3G22890 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.4125
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT4G33650 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic EnhancementPhenotypic Suppression | FSW = 0.2229
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT5G09660 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.3567
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.2857
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT3G58610 | PredictedSynthetic Lethality | FSW = 0.1869
| Unknown | KETOL-ACID REDUCTOISOMERASE |
AT1G64190 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexCo-purification | FSW = 0.1717
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT5G51820 | PredictedSynthetic LethalityPhenotypic Enhancementsynthetic growth defect | FSW = 0.2124
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT4G25910 | Predictedsynthetic growth defect | FSW = 0.1194
| Unknown | NFU3 STRUCTURAL MOLECULE |
AT5G15450 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2264
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G48860 | PredictedSynthetic Lethalityinterologs mappingsynthetic growth defectPhenotypic Enhancement | FSW = 0.3135
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT5G60540 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.3248
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT5G58640 | PredictedPhenotypic Enhancement | FSW = 0.0705
| Unknown | SELENOPROTEIN-RELATED |
AT4G36490 | Predictedsynthetic growth defect | FSW = 0.0765
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT1G20090 | Predictedsynthetic growth defect | FSW = 0.0832
| Unknown | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
AT1G04750 | PredictedPhenotypic Enhancementsynthetic growth defectSynthetic LethalitySynthetic Lethality | FSW = 0.3701
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G24400 | PredictedSynthetic Lethality | FSW = 0.0182
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G80050 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2152
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT1G07180 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0759
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT2G44680 | Predictedsynthetic growth defect | FSW = 0.0376
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT1G21700 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2197
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT3G52250 | PredictedPhenotypic Enhancement | FSW = 0.1680
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT2G36170 | Predictedinterologs mapping | FSW = 0.0898
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT5G60980 | Predictedsynthetic growth defect | FSW = 0.0632
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G01020 | Predictedsynthetic growth defect | FSW = 0.0633
| Unknown | ISU2 (ISCU-LIKE 2) STRUCTURAL MOLECULE |
AT1G64880 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1707
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT5G24090 | PredictedSynthetic Lethality | FSW = 0.2564
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT2G19980 | PredictedPhenotypic Enhancement | FSW = 0.2126
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.2049
| Unknown | ARA6 GTP BINDING / GTPASE |
AT1G22200 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0107
| Unknown | UNKNOWN PROTEIN |
AT2G47990 | Predictedinterologs mapping | FSW = 0.0750
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT4G39200 | PredictedPhenotypic EnhancementSynthetic Lethalitysynthetic growth defect | FSW = 0.2811
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT1G62800 | Predictedsynthetic growth defect | FSW = 0.1845
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT3G13900 | PredictedPhenotypic Enhancement | FSW = 0.1545
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT2G42120 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0978
| Unknown | POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT5G49060 | PredictedPhenotypic Suppression | FSW = 0.0773
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT4G17190 | PredictedPhenotypic Enhancement | FSW = 0.1473
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G06550 | PredictedSynthetic Lethality | FSW = 0.0668
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT1G10210 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1643
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G21370 | Predictedsynthetic growth defect | FSW = 0.2646
| Unknown | UNKNOWN PROTEIN |
AT1G23460 | PredictedPhenotypic Enhancement | FSW = 0.2256
| Unknown | POLYGALACTURONASE |
AT1G25155 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.3489
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G26690 | PredictedPhenotypic Enhancement | FSW = 0.2846
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G27320 | PredictedPhenotypic Enhancement | FSW = 0.1857
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G35350 | PredictedReconstituted ComplexAffinity Capture-MS | FSW = 0.7671
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G43910 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.1808
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G47830 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.3545
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G52500 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2215
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G54560 | Predictedsynthetic growth defect | FSW = 0.0730
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT1G60680 | Predictedsynthetic growth defect | FSW = 0.1548
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G66240 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0714
| Unknown | ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING |
AT1G66590 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancementsynthetic growth defect | FSW = 0.3309
| Unknown | COX19 FAMILY PROTEIN |
AT1G78770 | Predictedsynthetic growth defect | FSW = 0.2399
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT1G79210 | Predictedsynthetic growth defect | FSW = 0.0221
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT1G80510 | PredictedSynthetic Lethality | FSW = 0.0650
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT2G01600 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2027
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT2G03250 | Predictedsynthetic growth defect | FSW = 0.2104
| Unknown | EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN |
AT2G19220 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexCo-purification | FSW = 0.0749
| Unknown | UNKNOWN PROTEIN |
AT2G24960 | Predictedsynthetic growth defect | FSW = 0.1448
| Unknown | UNKNOWN PROTEIN |
AT2G30800 | Predictedsynthetic growth defect | FSW = 0.1780
| Unknown | HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G32160 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2201
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
AT2G37420 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2359
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G37925 | Predictedsynthetic growth defect | FSW = 0.0563
| Unknown | COPT4 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT2G38490 | Predictedsynthetic growth defect | FSW = 0.1237
| Unknown | CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT2G48100 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2208
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G01100 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexCo-purification | FSW = 0.1921
| Unknown | HYP1 (HYPOTHETICAL PROTEIN 1) |
AT3G02320 | PredictedSynthetic Lethality | FSW = 0.1663
| Unknown | RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE |
AT3G03080 | Predictedsynthetic growth defect | FSW = 0.1176
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT3G09640 | PredictedPhenotypic Suppression | FSW = 0.0582
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G11230 | PredictedPhenotypic Enhancement | FSW = 0.2185
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G18660 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2510
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G21460 | Predictedsynthetic growth defect | FSW = 0.1504
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT1G10090 | Predictedsynthetic growth defect | FSW = 0.1938
| Unknown | UNKNOWN PROTEIN |
AT1G11510 | Predictedsynthetic growth defect | FSW = 0.2557
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G55060 | PredictedSynthetic Lethality | FSW = 0.1442
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G74810 | PredictedSynthetic Lethality | FSW = 0.1733
| Unknown | BOR5 ANION EXCHANGER |
AT2G23820 | PredictedPhenotypic Enhancement | FSW = 0.0877
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
AT2G34250 | Predictedinterologs mapping | FSW = 0.0365
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT3G24010 | Predictedsynthetic growth defect | FSW = 0.2760
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G25900 | Predictedsynthetic growth defectSynthetic LethalityPhenotypic Enhancement | FSW = 0.2416
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G45240 | Predictedsynthetic growth defectSynthetic LethalityPhenotypic Enhancement | FSW = 0.3741
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G47290 | Predictedsynthetic growth defect | FSW = 0.1766
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT3G53030 | Predictedsynthetic growth defect | FSW = 0.2820
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT3G59540 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2508
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G14000 | PredictedSynthetic Lethalityinterologs mapping | FSW = 0.0925
| Unknown | UNKNOWN PROTEIN |
AT4G19880 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1052
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
AT4G21490 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.4322
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G25950 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1734
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G27130 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.6190
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G27960 | PredictedSynthetic Lethality | FSW = 0.0848
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT4G29580 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2376
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G16170 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2395
| Unknown | UNKNOWN PROTEIN |
AT5G16980 | Predictedsynthetic growth defectPhenotypic EnhancementSynthetic Lethality | FSW = 0.4497
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G17860 | PredictedSynthetic LethalityPhenotypic Enhancementsynthetic growth defectSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.3864
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G20340 | Predictedsynthetic growth defect | FSW = 0.2469
| Unknown | BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G45620 | Predictedsynthetic growth defect | FSW = 0.4499
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G47080 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexCo-purification | FSW = 0.0638
| Unknown | CKB1 PROTEIN KINASE REGULATOR |
AT5G60550 | PredictedSynthetic Lethality | FSW = 0.0843
| Unknown | GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE |
AT3G27440 | PredictedSynthetic Lethality | FSW = 0.1326
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT3G53510 | PredictedPhenotypic Enhancement | FSW = 0.0063
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT4G12620 | PredictedSynthetic Lethality | FSW = 0.0632
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT4G12790 | Predictedsynthetic growth defect | FSW = 0.0417
| Unknown | ATP-BINDING FAMILY PROTEIN |
AT4G22140 | Predictedsynthetic growth defect | FSW = 0.0500
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G24160 | PredictedPhenotypic Enhancement | FSW = 0.1237
| Unknown | HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN |
AT4G36050 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2193
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G01770 | PredictedReconstituted ComplexPhenotypic Enhancement | FSW = 0.3837
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G05420 | Predictedsynthetic growth defect | FSW = 0.0388
| Unknown | IMMUNOPHILIN PUTATIVE / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE |
AT5G13860 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1562
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G14060 | PredictedSynthetic Lethality | FSW = 0.2825
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G19510 | PredictedCo-purification | FSW = 0.0358
| Unknown | ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2) |
AT5G26250 | PredictedSynthetic Lethality | FSW = 0.0738
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G49930 | PredictedSynthetic Lethality | FSW = 0.0563
| Unknown | EMB1441 (EMBRYO DEFECTIVE 1441) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G49970 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2750
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454