Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G22860 - ( TIF3C2 translation initiation factor )
43 Proteins interacs with AT3G22860Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07770 | PredictedAffinity Capture-MS | FSW = 0.0501
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G62870 | PredictedSynthetic Lethality | FSW = 0.0027
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G25780 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationCo-purification | FSW = 0.2901
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT5G20290 | PredictedAffinity Capture-MS | FSW = 0.0553
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT3G20550 | PredictedAffinity Capture-MS | FSW = 0.0165
| Unknown | DDL (DAWDLE) |
AT3G11400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4021
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G |
AT5G20920 | Predictedtwo hybrid | FSW = 0.1331
| Unknown | EIF2 BETA TRANSLATION INITIATION FACTOR |
AT4G11420 | PredictedReconstituted ComplexCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.3360
| Unknown | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
AT3G57290 | Predictedtwo hybrid | FSW = 0.1240
| Unknown | EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) TRANSLATION INITIATION FACTOR |
AT2G42520 | PredictedAffinity Capture-MS | FSW = 0.0454
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT2G44680 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0570
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT3G55620 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT3G57150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0222
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT2G41630 | PredictedAffinity Capture-MS | FSW = 0.0480
| Unknown | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT1G19140 | PredictedReconstituted Complex | FSW = 0.0766
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN UBIQUINONE BIOSYNTHETIC PROCESS LOCATED IN MITOCHONDRION EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S COQ9 (INTERPROIPR013718) UBIQUINONE BIOSYNTHESIS PROTEIN COQ9 (INTERPROIPR012762) HAS 598 BLAST HITS TO 598 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 149 METAZOA - 114 FUNGI - 60 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 253 (SOURCE NCBI BLINK) |
AT2G47510 | PredictedAffinity Capture-MS | FSW = 0.0057
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT2G30910 | PredictedAffinity Capture-MS | FSW = 0.0120
| Unknown | ARPC1A (ACTIN-RELATED PROTEIN C1A) ACTIN BINDING / NUCLEOTIDE BINDING |
AT4G16420 | PredictedSynthetic Lethality | FSW = 0.0089
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G53300 | PredictedAffinity Capture-MS | FSW = 0.0497
| Unknown | TTL1 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 1) BINDING |
AT5G22920 | Predictedtwo hybrid | FSW = 0.0234
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G54940 | Predictedtwo hybrid | FSW = 0.0815
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G33250 | PredictedReconstituted Complex | FSW = 0.1747
| Unknown | EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K) TRANSLATION INITIATION FACTOR |
AT5G06000 | Predictedin vitroin vivoAffinity Capture-MSAffinity Capture-Western | FSW = 0.2238
| Unknown | EIF3G2 RNA BINDING / TRANSLATION INITIATION FACTOR |
AT5G37475 | Predictedin vivo | FSW = 0.0730
| Unknown | TRANSLATION INITIATION FACTOR-RELATED |
AT1G78050 | PredictedAffinity Capture-MS | FSW = 0.0638
| Unknown | PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE) CATALYTIC/ INTRAMOLECULAR TRANSFERASE PHOSPHOTRANSFERASES |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT4G19003 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0089
| Unknown | VPS25 |
AT5G16170 | Predictedsynthetic growth defect | FSW = 0.0296
| Unknown | UNKNOWN PROTEIN |
AT2G46280 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationCo-purification | FSW = 0.1482
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G36730 | PredictedReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationReconstituted Complextwo hybrid | FSW = 0.2876
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
AT3G13640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0900
| Unknown | ATRLI1 TRANSPORTER |
AT1G52380 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN |
AT1G04170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1558
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT3G05090 | PredictedAffinity Capture-MS | FSW = 0.1200
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G54290 | Predictedtwo hybridtwo hybridReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexSynthetic Rescuetwo hybrid | FSW = 0.0780
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G56740 | PredictedAffinity Capture-MS | FSW = 0.0576
| Unknown | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT1G21160 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1491
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT3G20630 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) UBIQUITIN-SPECIFIC PROTEASE |
AT3G09100 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0618
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT1G04160 | PredictedAffinity Capture-MS | FSW = 0.0109
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT3G59410 | PredictedSynthetic Lethality | FSW = 0.0094
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G25210 | PredictedSynthetic Rescue | FSW = 0.0348
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39A) |
AT3G56150 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4577
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454