Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G23060 - ( zinc finger (C3HC4-type RING finger) family protein )

6 Proteins interacs with AT3G23060
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G20740

Predicted

Phenotypic Suppression

FSW = 0.1078

Unknown

FIE (FERTILIZATION-INDEPENDENT ENDOSPERM) NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT3G18480

Predicted

Phenotypic Suppression

FSW = 0.0275

Unknown

ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT)
AT4G02020

Predicted

Phenotypic Suppression

Phenotypic Enhancement

FSW = 0.4000

Unknown

SWN (SWINGER) TRANSCRIPTION FACTOR
AT5G42400

Predicted

Phenotypic Enhancement

FSW = 0.4260

Unknown

SDG25 (SET DOMAIN PROTEIN 25)
AT5G44280

Predicted

Phenotypic Suppression

Phenotypic Suppression

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.2307

Unknown

RING1A (RING 1A) PROTEIN BINDING / ZINC ION BINDING
AT5G46250

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.3037

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454