Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G23600 - ( dienelactone hydrolase family protein )
26 Proteins interacs with AT3G23600Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G36160 | PredictedAffinity Capture-MS | FSW = 0.0381
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT5G12010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0414
| Class C:plasma membrane | UNKNOWN PROTEIN |
AT5G64270 | Predictedtwo hybrid | FSW = 0.0641
| Class C:nucleus | SPLICING FACTOR PUTATIVE |
AT1G28460 | PredictedAffinity Capture-Western | FSW = 0.0304
| Class C:nucleus | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G62870 | PredictedAffinity Capture-Westernsynthetic growth defect | FSW = 0.0170
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G32520 | PredictedGene fusion methodCo-expression | FSW = 0.0580
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT1G12900 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.0559
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT1G70580 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT2G17130 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0251
| Unknown | IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT1G01020 | PredictedAffinity Capture-Western | FSW = 0.0073
| Unknown | ARV1 |
AT1G10210 | PredictedAffinity Capture-MS | FSW = 0.0501
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G80510 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1380
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT2G01830 | PredictedAffinity Capture-MS | FSW = 0.0146
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
AT2G15820 | Predictedbiochemical | FSW = 0.1103
| Unknown | OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT2G27920 | PredictedAffinity Capture-MS | FSW = 0.0190
| Unknown | SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) SERINE-TYPE CARBOXYPEPTIDASE |
AT3G54150 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT3G60240 | PredictedSynthetic LethalityCo-crystal Structure | FSW = 0.0647
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT4G21490 | PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | NDB3 NADH DEHYDROGENASE |
AT5G16040 | Predictedinterologs mapping | FSW = 0.0277
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G19510 | PredictedPhenotypic EnhancementAffinity Capture-Westerninterologs mappingPhenotypic Enhancement | FSW = 0.1794
| Unknown | ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2) |
AT5G24510 | Predictedinterologs mapping | FSW = 0.1524
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE |
AT5G26250 | PredictedAffinity Capture-MS | FSW = 0.0156
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G67380 | PredictedAffinity Capture-MS | FSW = 0.0363
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT4G38250 | PredictedAffinity Capture-Western | FSW = 0.0188
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT3G23570 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0279
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454