Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G25100 - ( CDC45 (cell division cycle 45) )
78 Proteins interacs with AT3G25100Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01390 | PredictedSynthetic Lethality | FSW = 0.0099
| Unknown | VMA10 (VACUOLAR MEMBRANE ATPASE 10) HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
AT1G12360 | PredictedSynthetic Lethality | FSW = 0.0151
| Unknown | KEU (KEULE) PROTEIN TRANSPORTER |
AT2G06510 | PredictedAffinity Capture-Western | FSW = 0.1260
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT1G48850 | PredictedSynthetic Lethality | FSW = 0.0090
| Unknown | EMB1144 (EMBRYO DEFECTIVE 1144) CHORISMATE SYNTHASE |
AT2G28190 | PredictedSynthetic Lethality | FSW = 0.0822
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT5G63110 | PredictedAffinity Capture-MS | FSW = 0.0697
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT4G35800 | PredictedAffinity Capture-MS | FSW = 0.0403
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G58230 | PredictedSynthetic LethalityCo-expression | FSW = 0.0526
| Unknown | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT5G63980 | PredictedSynthetic Lethality | FSW = 0.0091
| Unknown | SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
AT1G11890 | PredictedSynthetic Lethality | FSW = 0.0803
| Unknown | SEC22 TRANSPORTER |
AT4G05190 | PredictedSynthetic LethalityCo-expression | FSW = 0.0927
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT1G44900 | Predictedinteraction predictionSynthetic LethalityAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSSynthetic LethalityAffinity Capture-MSsynthetic growth defectSynthetic RescueColocalizationCo-expression | FSW = 0.1911
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT3G44530 | PredictedSynthetic Lethality | FSW = 0.0296
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G19120 | PredictedSynthetic Lethality | FSW = 0.0733
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G13940 | PredictedSynthetic LethalityCo-expression | FSW = 0.0308
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G38130 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0449
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT4G02060 | Predictedtwo hybridin vitroin vitroco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridin vitroAffinity Capture-MSco-fractionationCo-fractionationAffinity Capture-Westerninterologs mappingSynthetic Rescueinteraction predictionCo-expression | FSW = 0.2073
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G26310 | PredictedAffinity Capture-Western | FSW = 0.0258
| Unknown | CAL (CAULIFLOWER) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G03710 | PredictedAffinity Capture-Western | FSW = 0.0176
| Unknown | SEP4 (SEPALLATA 4) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G36740 | PredictedSynthetic Lethality | FSW = 0.1135
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT3G19210 | PredictedSynthetic Lethality | FSW = 0.1105
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G74240 | PredictedSynthetic Lethality | FSW = 0.0494
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT1G35940 | PredictedSynthetic Lethality | FSW = 0.1666
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT1G34065 | PredictedSynthetic LethalityCo-expression | FSW = 0.0093
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT2G31970 | PredictedSynthetic LethalityCo-expression | FSW = 0.1076
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G57450 | PredictedSynthetic Lethality | FSW = 0.1602
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT5G66130 | PredictedSynthetic Lethality | FSW = 0.2127
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT3G25980 | PredictedSynthetic LethalityCo-expression | FSW = 0.0748
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT5G40820 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.2050
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT5G19910 | PredictedSynthetic Lethality | FSW = 0.1569
| Unknown | SOH1 FAMILY PROTEIN |
AT1G26840 | Predictedtwo hybrid | FSW = 0.1085
| Unknown | ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6) DNA BINDING |
AT3G12530 | PredictedAffinity Capture-Western | FSW = 0.0381
| Unknown | PSF2 |
AT2G37560 | Predictedtwo hybridSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.2769
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT2G21790 | Predictedsynthetic growth defect | FSW = 0.0340
| Unknown | RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT1G08830 | PredictedSynthetic Lethality | FSW = 0.0956
| Unknown | CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE |
AT2G07690 | PredictedSynthetic RescueAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternSynthetic Rescueinteraction predictionCo-expression | FSW = 0.1858
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT2G16440 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSinterologs mappingsynthetic growth defectColocalization | FSW = 0.2007
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT4G35750 | Predictedtwo hybrid | FSW = 0.0086
| Unknown | RHO-GTPASE-ACTIVATING PROTEIN-RELATED |
AT5G61530 | Predictedtwo hybrid | FSW = 0.0086
| Unknown | SMALL G PROTEIN FAMILY PROTEIN / RHOGAP FAMILY PROTEIN |
AT2G20980 | PredictedSynthetic LethalityAffinity Capture-MSColocalizationSynthetic Lethalityinterologs mapping | FSW = 0.2342
| Unknown | MCM10 |
AT4G12620 | Predictedtwo hybridSynthetic Lethality | FSW = 0.1497
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT5G44635 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MStwo hybrid | FSW = 0.1113
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT5G46280 | Predictedinteraction predictiontwo hybridSynthetic LethalitySynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSPhenotypic SuppressionCo-expression | FSW = 0.0867
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT5G67100 | Predictedin vitroAffinity Capture-WesternCo-expression | FSW = 0.0642
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
AT1G04730 | PredictedSynthetic LethalityCo-expression | FSW = 0.2173
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G52740 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.1063
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G59890 | PredictedAffinity Capture-MS | FSW = 0.0673
| Unknown | SNL5 (SIN3-LIKE 5) |
AT1G61040 | PredictedSynthetic Lethality | FSW = 0.0758
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G66740 | PredictedSynthetic LethalityCo-expression | FSW = 0.1870
| Unknown | SGA2 |
AT2G34770 | PredictedSynthetic Lethality | FSW = 0.0313
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT2G44580 | PredictedSynthetic Lethality | FSW = 0.1871
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G02820 | PredictedSynthetic LethalityCo-expression | FSW = 0.1962
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G22480 | PredictedSynthetic LethalityCo-expression | FSW = 0.1316
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G60860 | PredictedSynthetic Lethality | FSW = 0.0149
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT5G27740 | PredictedSynthetic LethalityCo-expression | FSW = 0.1007
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G49010 | PredictedAffinity Capture-MS | FSW = 0.1877
| Unknown | SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) |
AT3G42660 | PredictedSynthetic LethalityCo-expression | FSW = 0.2261
| Unknown | NUCLEOTIDE BINDING |
AT3G58180 | PredictedSynthetic Lethality | FSW = 0.0397
| Unknown | PBS LYASE HEAT-LIKE REPEAT-CONTAINING PROTEIN |
AT4G25120 | PredictedSynthetic Lethality | FSW = 0.0921
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT4G27180 | PredictedSynthetic Lethality | FSW = 0.1109
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT4G33240 | PredictedSynthetic Lethality | FSW = 0.0827
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING |
AT5G22110 | PredictedAffinity Capture-Western | FSW = 0.0722
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
AT5G23290 | PredictedSynthetic Lethality | FSW = 0.0879
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G55310 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1168
| Unknown | TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I |
AT5G56740 | PredictedSynthetic LethalityCo-expression | FSW = 0.0339
| Unknown | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT5G61150 | PredictedSynthetic LethalityCo-expression | FSW = 0.0852
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT5G63920 | PredictedSynthetic LethalityCo-expression | FSW = 0.1696
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
AT5G65180 | PredictedSynthetic Lethality | FSW = 0.0803
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK) |
AT1G19080 | PredictedColocalizationsynthetic growth defect | FSW = 0.0916
| Unknown | TTN10 (TITAN 10) |
AT4G16970 | PredictedColocalizationColocalizationsynthetic growth defect | FSW = 0.2489
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G10450 | PredictedAffinity Capture-MS | FSW = 0.0283
| Unknown | SNL6 (SIN3-LIKE 6) |
AT3G26990 | PredictedSynthetic Lethality | FSW = 0.0518
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 815 BLAST HITS TO 806 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 490 FUNGI - 159 PLANTS - 81 VIRUSES - 1 OTHER EUKARYOTES - 74 (SOURCE NCBI BLINK) |
AT1G71010 | PredictedSynthetic Lethality | FSW = 0.0441
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT5G55300 | PredictedSynthetic LethalitySynthetic LethalityCo-expression | FSW = 0.0495
| Unknown | TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I |
AT5G09290 | PredictedSynthetic Lethality | FSW = 0.0176
| Unknown | 3(2)5-BISPHOSPHATE NUCLEOTIDASE PUTATIVE / INOSITOL POLYPHOSPHATE 1-PHOSPHATASE PUTATIVE |
AT1G02010 | PredictedSynthetic Lethality | FSW = 0.0227
| Unknown | SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER |
AT1G01960 | PredictedSynthetic Lethality | FSW = 0.0107
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT1G24190 | Predictedinteraction prediction | FSW = 0.0169
| Unknown | SNL3 (SIN3-LIKE 3) TRANSCRIPTION REPRESSOR |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454