Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G25540 - ( LAG1 )
24 Proteins interacs with AT3G25540Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G66680 | Predictedinteraction prediction | FSW = 0.0129
| Class C:plasma membrane | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT1G11680 | Predictedinteraction prediction | FSW = 0.0397
| Class C:plasma membrane | CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE |
AT3G55360 | Predictedinteraction prediction | FSW = 0.0416
| Class C:plasma membrane | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT3G19260 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0324
| Class C:plasma membrane | LOH2 (LAG ONE HOMOLOGUE 2) |
AT1G80050 | PredictedSynthetic Lethality | FSW = 0.0400
| Class C:plasma membrane | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT5G63400 | Predictedsynthetic growth defect | FSW = 0.0486
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0104
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G07420 | Predictedinteraction prediction | FSW = 0.0726
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT5G51820 | PredictedSynthetic Lethality | FSW = 0.0441
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT1G10070 | Predictedbiochemical | FSW = 0.0334
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT5G53480 | Predictedtwo hybridtwo hybridtwo hybridinterologs mapping | FSW = 0.0155
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT5G54840 | Predictedinteraction prediction | FSW = 0.0117
| Unknown | SGP1 GTP BINDING |
AT1G05830 | Predictedtwo hybrid | FSW = 0.0112
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G10210 | Predictedbiochemical | FSW = 0.0323
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G70290 | PredictedAffinity Capture-MS | FSW = 0.0320
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT2G31260 | Predictedinterologs mappingsynthetic growth defectPhenotypic Enhancement | FSW = 0.0817
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.0486
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT4G19560 | PredictedAffinity Capture-MS | FSW = 0.1338
| Unknown | CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G45600 | Predictedinteraction prediction | FSW = 0.0062
| Unknown | GAS41 PROTEIN BINDING |
AT4G39830 | Predictedinteraction prediction | FSW = 0.0347
| Unknown | L-ASCORBATE OXIDASE PUTATIVE |
AT4G40042 | Predictedinteraction prediction | FSW = 0.1051
| Unknown | PEPTIDASE |
AT3G02280 | Predictedinteraction prediction | FSW = 0.0593
| Unknown | FLAVODOXIN FAMILY PROTEIN |
AT2G34980 | Predictedinteraction prediction | FSW = 0.0747
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT1G08750 | Predictedinteraction prediction | FSW = 0.0726
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454