Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G25670 - ( leucine-rich repeat family protein )

9 Proteins interacs with AT3G25670
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G22250

Predicted

Gene fusion method

FSW = 0.0529

Unknown

AMINOTRANSFERASE CLASS I AND II FAMILY PROTEIN
AT4G28560

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0443

Unknown

RIC7 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 7) PROTEIN BINDING
AT4G15310

Predicted

Gene fusion method

FSW = 0.2158

Unknown

CYP702A3 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE
AT5G46180

Predicted

Gene fusion method

FSW = 0.0395

Unknown

DELTA-OAT ORNITHINE-OXO-ACID TRANSAMINASE
AT4G11920

Predicted

Gene fusion method

FSW = 0.0373

Unknown

CCS52A2 SIGNAL TRANSDUCER
AT3G46930

Predicted

Gene fusion method

FSW = 0.1641

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G43910

Predicted

Gene fusion method

FSW = 0.0430

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT4G24710

Predicted

Gene fusion method

FSW = 0.0611

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT4G15396

Predicted

Gene fusion method

FSW = 0.2657

Unknown

CYP702A6 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454