Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G25810 - ( myrcene/ocimene synthase putative )

6 Proteins interacs with AT3G25810
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78300

Experimental

FSW = 0.0122

Unknown

GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G16740

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2622

Unknown

ATTPS03 (E)-BETA-OCIMENE SYNTHASE/ MYRCENE SYNTHASE
AT2G24210

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2060

Unknown

TPS10 (TERPENE SYNTHASE 10) (E)-BETA-OCIMENE SYNTHASE/ MYRCENE SYNTHASE
AT4G15870

Predicted

Enriched domain pair

Gene fusion method

Co-expression

FSW = 0.1973

Unknown

ATTS1 LYASE/ MAGNESIUM ION BINDING
AT1G66020

Predicted

Enriched domain pair

Gene fusion method

Co-expression

FSW = 0.1381

Unknown

TERPENE SYNTHASE/CYCLASE FAMILY PROTEIN
AT3G25820

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.2455

Unknown

ATTPS-CIN (TERPENE SYNTHASE-LIKE SEQUENCE-18-CINEOLE) (E)-BETA-OCIMENE SYNTHASE/ MYRCENE SYNTHASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454