Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G26340 - ( 20S proteasome beta subunit E putative )
14 Proteins interacs with AT3G26340Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G01610 | Predictedtwo hybrid | FSW = 0.0909
| Unknown | CATHEPSIN B-LIKE CYSTEINE PROTEASE PUTATIVE |
AT1G02305 | Predictedtwo hybrid | FSW = 0.1333
| Unknown | CATHEPSIN B-LIKE CYSTEINE PROTEASE PUTATIVE |
AT4G24820 | PredictedAffinity Capture-MS | FSW = 0.0612
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT3G14080 | Predictedtwo hybridtwo hybrid | FSW = 0.0645
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G19120 | Predictedtwo hybrid | FSW = 0.0250
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G13060 | PredictedPhylogenetic profile method | FSW = 0.1953
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G16470 | Predictedin vivoin vitrotwo hybrid | FSW = 0.1319
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G36630 | Predictedtwo hybrid | FSW = 0.0435
| Unknown | EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR |
AT1G11755 | Predictedtwo hybrid | FSW = 0.0495
| Unknown | LEW1 (LEAF WILTING 1) DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE |
AT1G74150 | Predictedtwo hybrid | FSW = 0.0870
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 14 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GALACTOSE OXIDASE/KELCH BETA-PROPELLER (INTERPROIPR011043) KELCH REPEAT TYPE 1 (INTERPROIPR006652) KELCH REPEAT TYPE 2 (INTERPROIPR011498) KELCH-TYPE BETA PROPELLER (INTERPROIPR015915) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G186101) HAS 8525 BLAST HITS TO 4249 PROTEINS IN 295 SPECIES ARCHAE - 10 BACTERIA - 313 METAZOA - 3989 FUNGI - 859 PLANTS - 1220 VIRUSES - 19 OTHER EUKARYOTES - 2115 (SOURCE NCBI BLINK) |
AT5G12220 | Predictedtwo hybrid | FSW = 0.0426
| Unknown | LAS1-LIKE FAMILY PROTEIN |
AT5G07060 | Predictedtwo hybrid | FSW = 0.0556
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT1G79210 | Predictedin vivoin vitro | FSW = 0.0581
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT3G27430 | PredictedGene fusion method | FSW = 0.1404
| Unknown | PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454