Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G26340 - ( 20S proteasome beta subunit E putative )

14 Proteins interacs with AT3G26340
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G01610

Predicted

two hybrid

FSW = 0.0909

Unknown

CATHEPSIN B-LIKE CYSTEINE PROTEASE PUTATIVE
AT1G02305

Predicted

two hybrid

FSW = 0.1333

Unknown

CATHEPSIN B-LIKE CYSTEINE PROTEASE PUTATIVE
AT4G24820

Predicted

Affinity Capture-MS

FSW = 0.0612

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7)
AT3G14080

Predicted

two hybrid

two hybrid

FSW = 0.0645

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G19120

Predicted

two hybrid

FSW = 0.0250

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G13060

Predicted

Phylogenetic profile method

FSW = 0.1953

Unknown

PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G16470

Predicted

in vivo

in vitro

two hybrid

FSW = 0.1319

Unknown

PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G36630

Predicted

two hybrid

FSW = 0.0435

Unknown

EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR
AT1G11755

Predicted

two hybrid

FSW = 0.0495

Unknown

LEW1 (LEAF WILTING 1) DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE
AT1G74150

Predicted

two hybrid

FSW = 0.0870

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 14 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GALACTOSE OXIDASE/KELCH BETA-PROPELLER (INTERPROIPR011043) KELCH REPEAT TYPE 1 (INTERPROIPR006652) KELCH REPEAT TYPE 2 (INTERPROIPR011498) KELCH-TYPE BETA PROPELLER (INTERPROIPR015915) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G186101) HAS 8525 BLAST HITS TO 4249 PROTEINS IN 295 SPECIES ARCHAE - 10 BACTERIA - 313 METAZOA - 3989 FUNGI - 859 PLANTS - 1220 VIRUSES - 19 OTHER EUKARYOTES - 2115 (SOURCE NCBI BLINK)
AT5G12220

Predicted

two hybrid

FSW = 0.0426

Unknown

LAS1-LIKE FAMILY PROTEIN
AT5G07060

Predicted

two hybrid

FSW = 0.0556

Unknown

ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT1G79210

Predicted

in vivo

in vitro

FSW = 0.0581

Unknown

20S PROTEASOME ALPHA SUBUNIT B PUTATIVE
AT3G27430

Predicted

Gene fusion method

FSW = 0.1404

Unknown

PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454