Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G26500 - ( leucine-rich repeat family protein )
34 Proteins interacs with AT3G26500Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63110 | PredictedGene fusion method | FSW = 0.0223
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
ATCG00790 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT |
AT3G12110 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0258
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G58760 | PredictedGene fusion method | FSW = 0.2051
| Unknown | ANKYRIN PROTEIN KINASE PUTATIVE |
AT4G13930 | PredictedGene fusion method | FSW = 0.0480
| Unknown | SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4) CATALYTIC/ GLYCINE HYDROXYMETHYLTRANSFERASE/ PYRIDOXAL PHOSPHATE BINDING |
AT3G10330 | Predictedinteraction prediction | FSW = 0.0064
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT1G03930 | PredictedGene fusion method | FSW = 0.0222
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT3G08720 | PredictedGene fusion method | FSW = 0.0798
| Unknown | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
AT2G26660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0912
| Unknown | SPX2 (SPX DOMAIN GENE 2) |
AT5G54840 | Predictedinteraction prediction | FSW = 0.0223
| Unknown | SGP1 GTP BINDING |
AT3G18130 | PredictedAffinity Capture-Western | FSW = 0.0054
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT3G52660 | PredictedEnriched domain pairGene fusion method | FSW = 0.1823
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G23570 | PredictedAffinity Capture-WesternSynthetic Rescue | FSW = 0.0270
| Unknown | SGT1A PROTEIN BINDING |
AT4G18040 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0304
| Unknown | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT1G70320 | PredictedSynthetic Rescue | FSW = 0.0206
| Unknown | UPL2 (UBIQUITIN-PROTEIN LIGASE 2) UBIQUITIN-PROTEIN LIGASE |
AT3G10920 | PredictedSynthetic Lethality | FSW = 0.0042
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT2G31200 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0747
| Unknown | ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT1G29990 | PredictedAffinity Capture-MS | FSW = 0.0103
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT3G16840 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0042
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT4G19210 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | ATRLI2 TRANSPORTER |
AT4G34490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-WesternReconstituted Complexinterologs mappinginteraction prediction | FSW = 0.0641
| Unknown | ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) ACTIN BINDING |
AT3G27060 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0758
| Unknown | TSO2 (TSO MEANING UGLY IN CHINESE) OXIDOREDUCTASE/ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE/ TRANSITION METAL ION BINDING |
AT2G28820 | Predictedinteraction prediction | FSW = 0.0166
| Unknown | TSO2 (TSO MEANING UGLY IN CHINESE) OXIDOREDUCTASE/ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE/ TRANSITION METAL ION BINDING |
AT4G17080 | PredictedGene fusion method | FSW = 0.2500
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MORN MOTIF (INTERPROIPR003409) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MORN (MEMBRANE OCCUPATION AND RECOGNITION NEXUS) REPEAT-CONTAINING PROTEIN /PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE-RELATED (TAIRAT2G351701) HAS 18005 BLAST HITS TO 5199 PROTEINS IN 343 SPECIES ARCHAE - 0 BACTERIA - 1726 METAZOA - 3046 FUNGI - 93 PLANTS - 653 VIRUSES - 0 OTHER EUKARYOTES - 12487 (SOURCE NCBI BLINK) |
AT4G38480 | PredictedGene fusion method | FSW = 0.0865
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G47830 | PredictedGene fusion method | FSW = 0.0412
| Unknown | CATION EFFLUX FAMILY PROTEIN / METAL TOLERANCE PROTEIN PUTATIVE (MTPC1) |
AT4G33080 | PredictedGene fusion method | FSW = 0.0676
| Unknown | PROTEIN KINASE PUTATIVE |
AT1G49450 | PredictedGene fusion method | FSW = 0.0824
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G18330 | PredictedGene fusion method | FSW = 0.1262
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 PUTATIVE / EIF2S3 PUTATIVE / EIF-2-GAMMA PUTATIVE |
AT2G33070 | PredictedGene fusion method | FSW = 0.1620
| Unknown | NSP2 (NITRILE SPECIFIER PROTEIN 2) |
AT1G53330 | PredictedGene fusion method | FSW = 0.5714
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT3G02300 | PredictedGene fusion method | FSW = 0.5714
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G56180 | PredictedGene fusion method | FSW = 0.1823
| Unknown | ATARP8 (ACTIN-RELATED PROTEIN 8) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454