Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G26618 - ( ERF1-3 (eukaryotic release factor 1-3) translation release factor )

6 Proteins interacs with AT3G26618
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G18070

Predicted

in vivo

two hybrid

FSW = 0.0690

Unknown

EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE
AT1G12920

Predicted

Shared biological function

Enriched domain pair

Phylogenetic profile method

FSW = 0.1939

Unknown

ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) TRANSLATION RELEASE FACTOR
AT1G69960

Predicted

in vivo

two hybrid

FSW = 0.0426

Unknown

PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G47880

Predicted

Shared biological function

Enriched domain pair

Phylogenetic profile method

FSW = 0.0262

Unknown

ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR
AT2G20560

Predicted

two hybrid

two hybrid

FSW = 0.0275

Unknown

DNAJ HEAT SHOCK FAMILY PROTEIN
AT1G49760

Predicted

Affinity Capture-Western

FSW = 0.0235

Unknown

PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454