Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G26650 - ( GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT) glyceraldehyde-3-phosphate dehydrogenase/ protein binding )

12 Proteins interacs with AT3G26650
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G32060

Experimental

Co-purification

Reconstituted Complex

Co-purification

FSW = 0.3214

Class A:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

PRK (PHOSPHORIBULOKINASE) ATP BINDING / PHOSPHORIBULOKINASE/ PROTEIN BINDING
AT3G62410

Experimental

Co-purification

molecular sieving

light scattering

Co-crystal Structure

Co-purification

FSW = 0.0933

Class A:

plastid

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

CP12-2 PROTEIN BINDING
AT1G13440

Predicted

Shared biological function

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2526

Class C:

plastid

GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G42970

Predicted

Shared biological function

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0504

Class C:

plastid

GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (NADP+)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G12900

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1547

Class C:

plastid

GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT3G04120

Predicted

Shared biological function

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1579

Unknown

GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT5G43320

Predicted

synthetic growth defect

FSW = 0.0529

Unknown

CKL8 (CASEIN KINASE I-LIKE 8) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G79530

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.2105

Unknown

GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G16300

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.3158

Unknown

GAPCP-2 NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT2G18600

Predicted

interologs mapping

synthetic growth defect

FSW = 0.0464

Unknown

RUB1-CONJUGATING ENZYME PUTATIVE
AT5G16040

Predicted

Gene fusion method

FSW = 0.0203

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT3G17640

Predicted

Gene fusion method

FSW = 0.1062

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454