Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G26990 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN endomembrane system EXPRESSED IN 24 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Protein of unknown function DUF618 (InterProIPR006903) Regulation of nuclear pre-mRNA protein (InterProIPR006569) ENTH/VHS (InterProIPR008942) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT5G100601) Has 815 Blast hits to 806 proteins in 138 species Archae - 0 Bacteria - 10 Metazoa - 490 Fungi - 159 Plants - 81 Viruses - 1 Other Eukaryotes - 74 (source NCBI BLink) )
17 Proteins interacs with AT3G26990| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G20260
   | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT5G53480
| PredictedAffinity Capture-MS | FSW = 0.0122
| Unknown | IMPORTIN BETA-2 PUTATIVE |
| AT4G35800
| PredictedAffinity Capture-MSAffinity Capture-MSProtein-peptide | FSW = 0.0397
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT5G27720
| Predictedtwo hybrid | FSW = 0.0064
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
| AT3G47690
| Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1070
| Unknown | ATEB1A MICROTUBULE BINDING |
| AT4G17620
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0268
| Unknown | GLYCINE-RICH PROTEIN |
| AT4G21710
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0342
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT2G37560
| PredictedSynthetic Lethality | FSW = 0.0410
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
| AT1G02690
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0240
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
| AT1G75660
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0591
| Unknown | XRN3 5-3 EXORIBONUCLEASE |
| AT1G14400
| Predictedsynthetic growth defect | FSW = 0.0302
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
| AT5G49510
| PredictedSynthetic Lethality | FSW = 0.0426
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
| AT3G25100
| PredictedSynthetic Lethality | FSW = 0.0518
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
| AT3G22590
| PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0281
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
| AT3G22480
| PredictedSynthetic Lethality | FSW = 0.0512
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
| AT1G29990
| PredictedSynthetic Lethality | FSW = 0.0370
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
| AT1G08780
| PredictedSynthetic Lethality | FSW = 0.0432
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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