Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G27100 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN chloroplast envelope EXPRESSED IN 23 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Transcription factor enhancer of yellow 2 (InterProIPR018783) Has 197 Blast hits to 197 proteins in 62 species Archae - 0 Bacteria - 0 Metazoa - 152 Fungi - 8 Plants - 24 Viruses - 0 Other Eukaryotes - 13 (source NCBI BLink) )

8 Proteins interacs with AT3G27100
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G20290

Predicted

two hybrid

FSW = 0.0115

Class C:

plastid

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G18480

Predicted

Phenotypic Suppression

FSW = 0.0135

Unknown

ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT)
AT3G10070

Predicted

two hybrid

FSW = 0.0117

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT2G32730

Predicted

two hybrid

FSW = 0.0189

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT4G36870

Predicted

Phenotypic Suppression

FSW = 0.0661

Unknown

BLH2 (BEL1-LIKE HOMEODOMAIN 2) DNA BINDING / TRANSCRIPTION FACTOR
AT5G58575

Predicted

two hybrid

FSW = 0.0693

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 11 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SGF11 TRANSCRIPTIONAL REGULATION (INTERPROIPR013246) HAS 148 BLAST HITS TO 148 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 94 FUNGI - 32 PLANTS - 16 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK)
AT4G34110

Predicted

two hybrid

FSW = 0.0416

Unknown

PAB2 (POLY(A) BINDING 2) RNA BINDING / TRANSLATION INITIATION FACTOR
AT5G42040

Predicted

two hybrid

FSW = 0.0618

Unknown

RPN12B (REGULATORY PARTICLE NON-ATPASE 12B) PEPTIDASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454