Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G27110 - ( peptidase M48 family protein )
33 Proteins interacs with AT3G27110Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63400 | PredictedAffinity Capture-MS | FSW = 0.0288
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT1G44170 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
AT5G24780 | PredictedAffinity Capture-MS | FSW = 0.0330
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT2G30710 | PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0387
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT4G38200 | PredictedAffinity Capture-MS | FSW = 0.1428
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT1G79020 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.0240
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT2G33540 | PredictedAffinity Capture-MS | FSW = 0.0885
| Unknown | CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3) CTD PHOSPHATASE/ PHOSPHOPROTEIN PHOSPHATASE |
AT3G55605 | PredictedAffinity Capture-MS | FSW = 0.0193
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT5G47630 | Predictedsynthetic growth defect | FSW = 0.0336
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT4G04870 | PredictedAffinity Capture-MS | FSW = 0.0165
| Unknown | CLS (CARDIOLIPIN SYNTHASE) CARDIOLIPIN SYNTHASE/ PHOSPHATIDYLTRANSFERASE |
AT4G28060 | PredictedAffinity Capture-MS | FSW = 0.1350
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 6B PUTATIVE |
AT5G20950 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | GLYCOSYL HYDROLASE FAMILY 3 PROTEIN |
AT1G17810 | PredictedAffinity Capture-MS | FSW = 0.0066
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.0065
| Unknown | UNKNOWN PROTEIN |
AT1G57620 | PredictedProtein-peptide | FSW = 0.0082
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G78770 | PredictedSynthetic Rescue | FSW = 0.0140
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G18720 | PredictedAffinity Capture-MS | FSW = 0.1216
| Unknown | GTP BINDING / GTPASE/ SERINE-TYPE PEPTIDASE/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0176
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G01930 | PredictedAffinity Capture-MS | FSW = 0.0270
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT1G02730 | PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT1G26320 | PredictedSynthetic Lethality | FSW = 0.0343
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G70290 | Predictedbiochemical | FSW = 0.0143
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT3G45740 | PredictedAffinity Capture-MS | FSW = 0.0278
| Unknown | HYDROLASE FAMILY PROTEIN / HAD-SUPERFAMILY PROTEIN |
AT3G61740 | PredictedAffinity Capture-MS | FSW = 0.0401
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G62770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0076
| Unknown | ATATG18A |
AT4G21490 | PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | NDB3 NADH DEHYDROGENASE |
AT5G19150 | PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G45620 | PredictedAffinity Capture-MS | FSW = 0.0412
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G06620 | PredictedAffinity Capture-MS | FSW = 0.1068
| Unknown | SDG38 (SET DOMAIN PROTEIN 38) |
AT5G38030 | PredictedSynthetic Rescue | FSW = 0.0389
| Unknown | MATE EFFLUX FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454