Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G27240 - ( cytochrome c1 putative )

10 Proteins interacs with AT3G27240
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G07727

Experimental

FSW = 0.1422

Class B:

vacuole

plasma membrane

nucleus

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 CYTOCHROME B (MTCYB) (COB) (CYTB)
AT5G40810

Predicted

Gene fusion method

Co-expression

FSW = 0.4482

Class C:

vacuole

mitochondrion

 CYTOCHROME C1 PUTATIVE
AT1G07890

Predicted

Reconstituted Complex

FSW = 0.0373

Class C:

plasma membrane

 APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE
AT5G13440

Predicted

in vitro

Enriched domain pair

FSW = 0.1426

Class C:

mitochondrion

 UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT MITOCHONDRIAL PUTATIVE / RIESKE IRON-SULFUR PROTEIN PUTATIVE
AT4G10040

Predicted

in vitro

Enriched domain pair

Co-expression

FSW = 0.0539

Class C:

mitochondrion

 CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING
AT3G11630

Predicted

synthetic growth defect

FSW = 0.0209

Unknown

 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT2G04038

Predicted

two hybrid

FSW = 0.0800

Unknown

 ATBZIP48 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 48) DNA BINDING / TRANSCRIPTION FACTOR
AT5G42970

Predicted

two hybrid

two hybrid

FSW = 0.0643

Unknown

 COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING
AT2G46470

Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.1625

Unknown

 OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE)
AT2G44150

Predicted

Synthetic Lethality

FSW = 0.0197

Unknown

 ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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