Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G27850 - ( RPL12-C (ribosomal protein l12-c) structural constituent of ribosome )

41 Proteins interacs with AT3G27850
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G41790

Predicted

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FSW = 0.0253

Class C:

plastid

 CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT2G36990

Predicted

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FSW = 0.0435

Class C:

plastid

 SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ SIGMA FACTOR/ TRANSCRIPTION FACTOR
AT5G23140

Predicted

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FSW = 0.0324

Class C:

plastid

 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE
AT1G50840

Predicted

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FSW = 0.1182

Class C:

plastid

 POLGAMMA2 (POLYMERASE GAMMA 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT1G14810

Predicted

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FSW = 0.1120

Class C:

plastid

 SEMIALDEHYDE DEHYDROGENASE FAMILY PROTEIN
AT4G30690

Predicted

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FSW = 0.0205

Class C:

plastid

 TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN
AT2G04270

Predicted

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FSW = 0.0101

Class C:

plastid

 RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE
AT3G27840

Predicted

Phylogenetic profile method

FSW = 0.0200

Class C:

plastid

 RPL12-B (RIBOSOMAL PROTEIN L12-B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G18440

Predicted

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FSW = 0.0444

Class C:

plastid

 PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN
AT1G65410

Predicted

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FSW = 0.0455

Class C:

plastid

 ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11) TRANSPORTER
AT3G18680

Predicted

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FSW = 0.0222

Class C:

plastid

 ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN
AT3G29430

Predicted

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FSW = 0.0182

Class C:

plastid

 GERANYLGERANYL PYROPHOSPHATE SYNTHASE PUTATIVE / GGPP SYNTHETASE PUTATIVE / FARNESYLTRANSTRANSFERASE PUTATIVE
AT4G04350

Predicted

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FSW = 0.0320

Class C:

plastid

 EMB2369 (EMBRYO DEFECTIVE 2369) ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT4G34350

Predicted

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FSW = 0.0445

Class C:

plastid

 HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE) 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE REDUCTASE/ 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE
AT5G42270

Predicted

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FSW = 0.0497

Class C:

plastid

 VAR1 (VARIEGATED 1) ATP-DEPENDENT PEPTIDASE/ ATPASE/ METALLOPEPTIDASE
AT4G02260

Predicted

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FSW = 0.0324

Class C:

plastid

 RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC
AT4G01800

Predicted

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FSW = 0.1925

Class C:

plastid

 PREPROTEIN TRANSLOCASE SECA SUBUNIT PUTATIVE
ATCG00190Predicted

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FSW = 0.1756

Class C:

plastid

 CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION
ATCG00740Predicted

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FSW = 0.1602

Class C:

plastid

 RNA POLYMERASE ALPHA SUBUNIT
AT1G53000

Predicted

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FSW = 0.0615

Unknown

 CYTIDYLYLTRANSFERASE FAMILY
AT1G14460

Predicted

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FSW = 0.0800

Unknown

 DNA POLYMERASE-RELATED
AT3G04880

Predicted

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FSW = 0.0909

Unknown

 DRT102 (DNA-DAMAGE-REPAIR/TOLERATION 2)
AT3G09210

Predicted

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FSW = 0.1629

Unknown

 PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) TRANSCRIPTION ELONGATION REGULATOR
AT4G11060

Predicted

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FSW = 0.0665

Unknown

 MTSSB (MITOCHONDRIALLY TARGETED SINGLE-STRANDED DNA BINDING PROTEIN) SINGLE-STRANDED DNA BINDING
AT2G45240

Predicted

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FSW = 0.0296

Unknown

 MAP1A (METHIONINE AMINOPEPTIDASE 1A) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE
AT5G53350

Predicted

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FSW = 0.1013

Unknown

 CLPX ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G79500

Predicted

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FSW = 0.0216

Unknown

 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA)
AT1G12244

Predicted

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FSW = 0.0519

Unknown

 DNA BINDING / HYDROLASE ACTING ON ESTER BONDS / NUCLEASE/ NUCLEIC ACID BINDING / RECOMBINASE
AT1G17850Predicted

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FSW = 0.0519

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RHODANESE-LIKE (INTERPROIPR001763) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN (TAIRAT2G407601) HAS 3833 BLAST HITS TO 3832 PROTEINS IN 847 SPECIES ARCHAE - 0 BACTERIA - 1695 METAZOA - 46 FUNGI - 2 PLANTS - 52 VIRUSES - 0 OTHER EUKARYOTES - 2038 (SOURCE NCBI BLINK)
AT1G26550

Predicted

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FSW = 0.0260

Unknown

 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PPIC-TYPE FAMILY PROTEIN
AT1G56350

Predicted

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FSW = 0.1070

Unknown

 PEPTIDE CHAIN RELEASE FACTOR PUTATIVE
AT1G73740

Predicted

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FSW = 0.0242

Unknown

 GLYCOSYL TRANSFERASE FAMILY 28 PROTEIN
AT4G21220

Predicted

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FSW = 0.0205

Unknown

 BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT4G26780

Predicted

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FSW = 0.0316

Unknown

 AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION
AT4G29540

Predicted

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FSW = 0.0515

Unknown

 BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT4G31150

Predicted

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FSW = 0.0732

Unknown

 ENDONUCLEASE V FAMILY PROTEIN
AT4G36020

Predicted

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FSW = 0.0417

Unknown

 CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT5G06410

Predicted

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FSW = 0.0421

Unknown

 DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT5G10910

Predicted

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FSW = 0.0211

Unknown

 MRAW METHYLASE FAMILY PROTEIN
AT5G51140

Predicted

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FSW = 0.0577

Unknown

 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT5G59440

Predicted

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FSW = 0.0081

Unknown

 ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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