Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G28380 - ( PGP17 (P-GLYCOPROTEIN 17) ATP binding / ATPase/ ATPase coupled to transmembrane movement of substances / nucleoside-triphosphatase/ nucleotide binding )

22 Proteins interacs with AT3G28380
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G62150

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.5814

Class C:

plasma membrane

PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G28415

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.9545

Class C:

plasma membrane

P-GLYCOPROTEIN PUTATIVE
AT3G28345

Predicted

Enriched domain pair

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 1.0000

Class C:

plasma membrane

ABC TRANSPORTER FAMILY PROTEIN
AT3G28860

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.8530

Class C:

plasma membrane

ABCB19 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / AUXIN EFFLUX TRANSMEMBRANE TRANSPORTER
AT2G36910

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.8457

Class C:

plasma membrane

ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / AUXIN EFFLUX TRANSMEMBRANE TRANSPORTER/ CALMODULIN BINDING
AT1G02520

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.8653

Class C:

plasma membrane

PGP11 (P-GLYCOPROTEIN 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G47000

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.6765

Class C:

plasma membrane

ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / XENOBIOTIC-TRANSPORTING ATPASE
AT2G39480

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2538

Class C:

plasma membrane

PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G55320

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.9545

Class C:

plasma membrane

PGP20 (P-GLYCOPROTEIN 20) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G10680

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.9323

Unknown

PGP10 (P-GLYCOPROTEIN 10) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G54280

Predicted

Gene fusion method

FSW = 0.0814

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT3G28390

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.9545

Unknown

PGP18 (P-GLYCOPROTEIN 18) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G28360

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.8715

Unknown

PGP16 (P-GLYCOPROTEIN 16) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G46540

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.8653

Unknown

PGP7 (P-GLYCOPROTEIN 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G28010

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.9545

Unknown

PGP14 (P-GLYCOPROTEIN 14) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G18050

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.9302

Unknown

PGP9 (P-GLYCOPROTEIN 9) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G27940

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.9075

Unknown

PGP13 (P-GLYCOPROTEIN 13) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G25960

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.7424

Unknown

PGP2 (P-GLYCOPROTEIN 2) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G01830

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.9545

Unknown

PGP5 (P-GLYCOPROTEIN 5) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G01820

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.9323

Unknown

PGP3 (P-GLYCOPROTEIN 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G02530

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.9302

Unknown

PGP12 (P-GLYCOPROTEIN 12) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G44630

Predicted

Gene fusion method

FSW = 0.2308

Unknown

DISEASE RESISTANCE PROTEIN RPP1-WSB-LIKE (TIR-NBS-LRR CLASS) PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454