Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G28450 - ( leucine-rich repeat transmembrane protein kinase putative )
23 Proteins interacs with AT3G28450Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G02880 | Experimentalprotein array | FSW = 0.3011
| Class A:plasma membraneClass B:vacuoleextracellularClass D:plasma membrane (p = 0.25)extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE |
AT1G27190 | Experimentalprotein array | FSW = 0.3719
| Class A:plasma membraneClass D:plasma membrane (p = 0.25)extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE |
AT1G56145 | Experimentalprotein array | FSW = 0.4444
| Class A:plasma membraneClass D:plasma membrane (p = 0.25)extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | LEUCINE-RICH REPEAT FAMILY PROTEIN / PROTEIN KINASE FAMILY PROTEIN |
AT2G48010 | Experimentalprotein array | FSW = 0.4444
| Class A:plasma membraneClass D:plasma membrane (p = 0.25)extracellular (p = 0.86)endoplasmic reticulum (p = 0.46) | RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3) KINASE/ RECEPTOR SIGNALING PROTEIN SERINE/THREONINE KINASE |
AT1G09840 | Experimentalprotein array | FSW = 0.1270
| Class A:plasma membraneClass D:cytosol (p = 0.67) | ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G43810 | Experimentalprotein array | FSW = 0.0893
| Class A:plasma membraneClass D:cytosol (p = 0.67) | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410 | Experimentalprotein array | FSW = 0.1109
| Class A:plasma membraneClass D:cytosol (p = 0.67) | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT4G23810 | Experimentalprotein array | FSW = 0.4000
| Class B:plasma membranenucleusClass D:cytosol (p = 0.67) | WRKY53 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT2G46340 | Experimentalprotein array | FSW = 0.0228
| Class B:plasma membranenucleus | SPA1 (SUPPRESSOR OF PHYA-105 1) PROTEIN BINDING / SIGNAL TRANSDUCER |
AT5G26170 | Experimentalprotein array | FSW = 0.1538
| Class B:plasma membranenucleus | WRKY50 TRANSCRIPTION FACTOR |
AT3G51920 | Experimentalprotein array | FSW = 0.1340
| Unknown | CAM9 (CALMODULIN 9) CALCIUM ION BINDING |
AT5G21274 | Experimentalprotein array | FSW = 0.1243
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
AT2G41090 | Experimentalprotein array | FSW = 0.1110
| Unknown | CALMODULIN-LIKE CALCIUM-BINDING PROTEIN 22 KDA (CABP-22) |
AT2G30980 | Experimentalprotein array | FSW = 0.2727
| Unknown | ASKDZETA (ARABIDOPSIS SHAGGY-RELATED PROTEIN KINASE DZETA) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G34380 | Experimentalprotein array | FSW = 0.4000
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G57730 | Experimentalprotein array | FSW = 0.1231
| Unknown | PROTEIN KINASE PUTATIVE |
AT5G66790 | Experimentalprotein array | FSW = 0.4444
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G14640 | Experimentalprotein array | FSW = 0.1250
| Unknown | CAM8 (CALMODULIN 8) CALCIUM ION BINDING |
AT5G48380 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1111
| Class C:plasma membrane | LEUCINE-RICH REPEAT FAMILY PROTEIN / PROTEIN KINASE FAMILY PROTEIN |
AT1G18390 | PredictedGene fusion method | FSW = 0.0645
| Class C:plasma membrane | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G10510 | PredictedGene fusion method | FSW = 0.1048
| Unknown | EMB2004 (EMBRYO DEFECTIVE 2004) |
AT1G69990 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0704
| Unknown | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE |
AT4G19210 | PredictedGene fusion method | FSW = 0.0351
| Unknown | ATRLI2 TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454