Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G28900 - ( 60S ribosomal protein L34 (RPL34C) )

6 Proteins interacs with AT3G28900
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G62870

Predicted

Synthetic Lethality

FSW = 0.0024

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G26880

Predicted

Gene fusion method

Co-expression

FSW = 0.0800

Unknown

60S RIBOSOMAL PROTEIN L34 (RPL34A)
AT1G48520

Predicted

Phenotypic Enhancement

FSW = 0.1131

Unknown

GATB (GLU-ADT SUBUNIT B) CARBON-NITROGEN LIGASE WITH GLUTAMINE AS AMIDO-N-DONOR / GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ LIGASE
AT1G34770

Predicted

Affinity Capture-MS

FSW = 0.0220

Unknown

MAGE-8 ANTIGEN-RELATED
AT2G17870

Predicted

Affinity Capture-MS

FSW = 0.0410

Unknown

COLD-SHOCK DNA-BINDING FAMILY PROTEIN
AT4G34910

Predicted

Affinity Capture-MS

FSW = 0.0274

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH16)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454