Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G29060 - ( LOCATED IN integral to membrane EXPRESSED IN 6 plant structures EXPRESSED DURING L mature pollen stage M germinated pollen stage 4 anthesis petal differentiation and expansion stage CONTAINS InterPro DOMAIN/s EXS C-terminal (InterProIPR004342) SPX N-terminal (InterProIPR004331) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G140401) Has 970 Blast hits to 889 proteins in 159 species Archae - 2 Bacteria - 5 Metazoa - 379 Fungi - 260 Plants - 176 Viruses - 28 Other Eukaryotes - 120 (source NCBI BLink) )
28 Proteins interacs with AT3G29060Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G47520 | PredictedPhenotypic Enhancement | FSW = 0.1603
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0673
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT1G55920 | PredictedPhenotypic Enhancement | FSW = 0.2398
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT5G26340 | PredictedPhenotypic Enhancement | FSW = 0.1649
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G69850 | PredictedPhenotypic Enhancement | FSW = 0.1870
| Unknown | ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER |
AT2G39480 | PredictedPhenotypic Enhancement | FSW = 0.2955
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G34450 | PredictedPhenotypic Enhancement | FSW = 0.2992
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT1G53165 | PredictedPhenotypic Enhancement | FSW = 0.1730
| Unknown | ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G29800 | PredictedPhenotypic Enhancement | FSW = 0.3256
| Unknown | AAA-TYPE ATPASE FAMILY |
AT1G29330 | PredictedPhenotypic Enhancement | FSW = 0.1424
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT4G33730 | PredictedPhenotypic Enhancement | FSW = 0.1610
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G01020 | PredictedCo-purification | FSW = 0.0844
| Unknown | ARV1 |
AT1G06830 | PredictedPhenotypic Enhancement | FSW = 0.0776
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G11530 | Predictedtwo hybrid | FSW = 0.0067
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G49520 | PredictedPhenotypic Enhancement | FSW = 0.1899
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G61670 | PredictedPhenotypic Enhancement | FSW = 0.3298
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT1G76920 | PredictedPhenotypic Enhancement | FSW = 0.1103
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT2G01830 | PredictedPhenotypic Enhancement | FSW = 0.1152
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
AT3G06460 | PredictedPhenotypic Enhancement | FSW = 0.0805
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT1G02630 | Predictedco-fractionationCo-fractionation | FSW = 0.1714
| Unknown | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER PUTATIVE (ENT8) |
AT1G34340 | PredictedPhenotypic Enhancement | FSW = 0.1801
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT4G33950 | PredictedPhenotypic Enhancement | FSW = 0.2764
| Unknown | OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE |
AT5G52200 | PredictedPhenotypic Enhancement | FSW = 0.2399
| Unknown | UNKNOWN PROTEIN |
AT5G57190 | PredictedPhenotypic Enhancement | FSW = 0.3923
| Unknown | PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE |
AT3G59290 | Predictedtwo hybrid | FSW = 0.0664
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT5G52210 | Predictedtwo hybrid | FSW = 0.0968
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT2G03260 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0552
| Unknown | EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN |
AT2G03240 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0552
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SPX N-TERMINAL (INTERPROIPR004331) EXS C-TERMINAL (INTERPROIPR004342) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G140401) HAS 764 BLAST HITS TO 738 PROTEINS IN 146 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 262 FUNGI - 250 PLANTS - 154 VIRUSES - 0 OTHER EUKARYOTES - 98 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454