Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G29060 - ( LOCATED IN integral to membrane EXPRESSED IN 6 plant structures EXPRESSED DURING L mature pollen stage M germinated pollen stage 4 anthesis petal differentiation and expansion stage CONTAINS InterPro DOMAIN/s EXS C-terminal (InterProIPR004342) SPX N-terminal (InterProIPR004331) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G140401) Has 970 Blast hits to 889 proteins in 159 species Archae - 2 Bacteria - 5 Metazoa - 379 Fungi - 260 Plants - 176 Viruses - 28 Other Eukaryotes - 120 (source NCBI BLink) )

28 Proteins interacs with AT3G29060
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G47520

Predicted

Phenotypic Enhancement

FSW = 0.1603

Unknown

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT5G09590

Predicted

Synthetic Lethality

FSW = 0.0673

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT1G55920

Predicted

Phenotypic Enhancement

FSW = 0.2398

Unknown

ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT5G26340

Predicted

Phenotypic Enhancement

FSW = 0.1649

Unknown

MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT1G69850

Predicted

Phenotypic Enhancement

FSW = 0.1870

Unknown

ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER
AT2G39480

Predicted

Phenotypic Enhancement

FSW = 0.2955

Unknown

PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G34450

Predicted

Phenotypic Enhancement

FSW = 0.2992

Unknown

HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN
AT1G53165

Predicted

Phenotypic Enhancement

FSW = 0.1730

Unknown

ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G29800

Predicted

Phenotypic Enhancement

FSW = 0.3256

Unknown

AAA-TYPE ATPASE FAMILY
AT1G29330

Predicted

Phenotypic Enhancement

FSW = 0.1424

Unknown

ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR
AT4G33730

Predicted

Phenotypic Enhancement

FSW = 0.1610

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT1G01020

Predicted

Co-purification

FSW = 0.0844

Unknown

ARV1
AT1G06830

Predicted

Phenotypic Enhancement

FSW = 0.0776

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT1G11530

Predicted

two hybrid

FSW = 0.0067

Unknown

ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE
AT1G49520

Predicted

Phenotypic Enhancement

FSW = 0.1899

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT1G61670

Predicted

Phenotypic Enhancement

FSW = 0.3298

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK)
AT1G76920

Predicted

Phenotypic Enhancement

FSW = 0.1103

Unknown

F-BOX FAMILY PROTEIN (FBX3)
AT2G01830

Predicted

Phenotypic Enhancement

FSW = 0.1152

Unknown

WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT3G06460

Predicted

Phenotypic Enhancement

FSW = 0.0805

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT1G02630

Predicted

co-fractionation

Co-fractionation

FSW = 0.1714

Unknown

EQUILIBRATIVE NUCLEOSIDE TRANSPORTER PUTATIVE (ENT8)
AT1G34340

Predicted

Phenotypic Enhancement

FSW = 0.1801

Unknown

ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN
AT4G33950

Predicted

Phenotypic Enhancement

FSW = 0.2764

Unknown

OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE
AT5G52200

Predicted

Phenotypic Enhancement

FSW = 0.2399

Unknown

UNKNOWN PROTEIN
AT5G57190

Predicted

Phenotypic Enhancement

FSW = 0.3923

Unknown

PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE
AT3G59290

Predicted

two hybrid

FSW = 0.0664

Unknown

EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT5G52210

Predicted

two hybrid

FSW = 0.0968

Unknown

ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT2G03260

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0552

Unknown

EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN
AT2G03240

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0552

Unknown

LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SPX N-TERMINAL (INTERPROIPR004331) EXS C-TERMINAL (INTERPROIPR004342) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G140401) HAS 764 BLAST HITS TO 738 PROTEINS IN 146 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 262 FUNGI - 250 PLANTS - 154 VIRUSES - 0 OTHER EUKARYOTES - 98 (SOURCE NCBI BLINK)

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454