Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G29070 - ( protein transmembrane transporter )
23 Proteins interacs with AT3G29070Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0418
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT1G14010 | PredictedPhylogenetic profile method | FSW = 0.1231
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G26590 | Predictedbiochemical | FSW = 0.0142
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0274
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G33650 | PredictedSynthetic Lethality | FSW = 0.0332
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT5G16150 | PredictedReconstituted Complextwo hybridAffinity Capture-Westerninterologs mapping | FSW = 0.0284
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G61290 | Predictedtwo hybridAffinity Capture-WesternReconstituted Complex | FSW = 0.1429
| Unknown | SYP124 (SYNTAXIN OF PLANTS 124) SNAP RECEPTOR |
AT1G80050 | PredictedSynthetic Lethality | FSW = 0.0300
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT3G13445 | Predictedinterologs mapping | FSW = 0.0170
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G69460 | PredictedPhylogenetic profile method | FSW = 0.3683
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G72660 | Predictedtwo hybrid | FSW = 0.0769
| Unknown | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN PUTATIVE |
AT2G28360 | PredictedAffinity Capture-Westerntwo hybridtwo hybridtwo hybridAffinity Capture-Western | FSW = 0.0532
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
AT2G32220 | Predictedinterologs mapping | FSW = 0.0635
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27A) |
AT3G45630 | PredictedAffinity Capture-Western | FSW = 0.0493
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G59540 | PredictedSynthetic Lethality | FSW = 0.0235
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G14240 | Predictedbiochemical | FSW = 0.0075
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT5G66640 | Predictedbiochemical | FSW = 0.0140
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT4G26510 | PredictedAffinity Capture-Western | FSW = 0.0623
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT1G57620 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2195
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G21900 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4091
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G10780 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4269
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G26690 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1252
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G09580 | PredictedPhylogenetic profile method | FSW = 0.1739
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454