Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G29130 - ( unknown protein )
11 Proteins interacs with AT3G29130Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G15580 | Predictedtwo hybrid | FSW = 0.0800
| Unknown | APG8H (AUTOPHAGY 8H) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE/ MICROTUBULE BINDING |
AT3G15640 | Predictedtwo hybrid | FSW = 0.1931
| Unknown | CYTOCHROME C OXIDASE FAMILY PROTEIN |
AT5G03540 | Predictedtwo hybrid | FSW = 0.0727
| Unknown | ATEXO70A1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A1) PROTEIN BINDING |
AT1G71820 | Predictedtwo hybrid | FSW = 0.0552
| Unknown | SEC6 |
AT3G54350 | Predictedtwo hybrid | FSW = 0.0369
| Unknown | EMB1967 (EMBRYO DEFECTIVE 1967) |
AT5G20430 | Predictedtwo hybrid | FSW = 0.0482
| Unknown | MOB1/PHOCEIN FAMILY PROTEIN |
AT2G27200 | Predictedtwo hybrid | FSW = 0.0306
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT2G30330 | Predictedtwo hybrid | FSW = 0.0863
| Unknown | GCN5L1 FAMILY PROTEIN |
AT3G24010 | Predictedtwo hybrid | FSW = 0.0086
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT4G28200 | Predictedtwo hybrid | FSW = 0.0220
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK) |
AT5G52350 | Predictedtwo hybrid | FSW = 0.0745
| Unknown | ATEXO70A3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A3) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454