Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G29350 - ( AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2) histidine phosphotransfer kinase/ protein binding / signal transducer )
27 Proteins interacs with AT3G29350Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G39340 | Experimental | FSW = 0.7315
| Class A:cytosolClass B:nucleusClass D:plastid (p = 0.78) | AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3) HISTIDINE PHOSPHOTRANSFER KINASE |
AT4G14340 | Experimentaltwo hybrid | FSW = 0.0215
| Class A:cytosolClass B:nucleusClass D:nucleus (p = 0.78) | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G04280 | Experimentaltwo hybridprotein complementation assaysplit-reporter assay | FSW = 0.1021
| Class A:cytosolClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22) PHOSPHOHISTIDINE PHOSPHATASE/ TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT2G40670 | Experimentalpull down | FSW = 0.2050
| Class A:cytosolClass D:nucleus (p = 0.78) | ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT1G66340 | Experimentaltwo hybrid | FSW = 0.1000
| Class B:unclearcytosolClass D:mitochondrion (p = 0.82) | ETR1 (ETHYLENE RESPONSE 1) ETHYLENE BINDING / PROTEIN HISTIDINE KINASE/ TWO-COMPONENT RESPONSE REGULATOR |
AT2G31070 | Experimentaltwo hybrid | FSW = 0.2500
| Class B:nucleuscytosolClass D:nucleus (p = 0.78) | TCP10 (TCP DOMAIN PROTEIN 10) TRANSCRIPTION FACTOR |
AT1G19050 | Experimentalpull downtwo hybridtwo hybrid | FSW = 0.2240
| Class B:nucleuscytosolClass D:nucleus (p = 0.78) | ARR7 (RESPONSE REGULATOR 7) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT4G31920 | Experimentaltwo hybrid | FSW = 0.1595
| Class B:nucleuscytosolClass D:nucleus (p = 0.78) | ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT1G59940 | Experimentaltwo hybridtwo hybrid | FSW = 0.1333
| Class D:plastid (p = 0.78)nucleus (p = 0.78) | ARR3 (RESPONSE REGULATOR 3) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT3G48100 | Experimentaltwo hybridtwo hybridtwo hybrid | FSW = 0.1045
| Class D:nucleus (p = 0.78) | ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT3G16857 | Experimentaltwo hybridtwo hybridReconstituted Complextwo hybrid | FSW = 0.2229
| Class D:nucleus (p = 0.78) | ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT4G16110 | Experimentaltwo hybridtwo hybridtwo hybridReconstituted Complextwo hybrid | FSW = 0.2667
| Class D:nucleus (p = 0.78) | ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT2G41310 | Experimental | FSW = 0.2824
| Class D:nucleus (p = 0.78) | ATRR3 (RESPONSE REGULATOR 3) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT3G57040 | Experimentaltwo hybridtwo hybrid | FSW = 0.2229
| Class D:nucleus (p = 0.78) | ARR9 (RESPONSE REGULATOR 9) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT2G01760 | Experimentalpull downtwo hybridtwo hybrid | FSW = 0.1750
| Class D:nucleus (p = 0.78) | ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT3G22880 | Experimental | FSW = 0.0263
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G20850 | Experimental | FSW = 0.0100
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT2G01830 | Experimentaltwo hybridtwo hybrid | FSW = 0.0498
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
AT5G35750 | Experimentalpull downtwo hybridtwo hybrid | FSW = 0.0982
| Unknown | AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G27320 | Experimentalpull down | FSW = 0.0718
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT3G21510 | Experimental | FSW = 0.7937
| Unknown | AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) HISTIDINE PHOSPHOTRANSFER KINASE |
AT4G29170 | Experimentaltwo hybridtwo hybrid | FSW = 0.1053
| Unknown | ATMND1 |
AT2G47430 | Experimentaltwo hybrid | FSW = 0.0580
| Unknown | CKI1 (CYTOKININ-INDEPENDENT 1) PROTEIN HISTIDINE KINASE/ TWO-COMPONENT RESPONSE REGULATOR |
AT3G46510 | Experimentalinteraction detection method | FSW = 0.0345
| Unknown | PUB13 (PLANT U-BOX 13) UBIQUITIN-PROTEIN LIGASE |
AT1G21560 | Experimental | FSW = 0.1067
| Unknown | UNKNOWN PROTEIN |
AT2G17820 | Experimentaltwo hybrid | FSW = 0.0968
| Unknown | ATHK1 (HISTIDINE KINASE 1) HISTIDINE PHOSPHOTRANSFER KINASE/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT5G19710 | PredictedGene fusion methodCo-expression | FSW = 0.1333
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN SEPAL EXPRESSED DURING 4 ANTHESIS BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS AHP4 (HPT PHOSPHOTRANSMITTER 4) HISTIDINE PHOSPHOTRANSFER KINASE/ TRANSFERASE TRANSFERRING PHOSPHORUS-CONTAINING GROUPS (TAIRAT3G163601) HAS 24 BLAST HITS TO 24 PROTEINS IN 5 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454