Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G29430 - ( geranylgeranyl pyrophosphate synthase putative / GGPP synthetase putative / farnesyltranstransferase putative )
17 Proteins interacs with AT3G29430| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G18620
   | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4881
| Class C:plastid | GERANYLGERANYL PYROPHOSPHATE SYNTHASE PUTATIVE / GGPP SYNTHETASE PUTATIVE / FARNESYLTRANSTRANSFERASE PUTATIVE |
| AT3G14550
| PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.4881
| Class C:plastid | GGPS3 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 3) FARNESYLTRANSTRANSFERASE |
| AT3G13120
| Predictedpull down | FSW = 0.0186
| Class C:plastid | 30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE |
| AT3G27850
| Predictedpull down | FSW = 0.0182
| Class C:plastid | RPL12-C (RIBOSOMAL PROTEIN L12-C) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G36810
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.6316
| Class C:plastid | GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1) FARNESYLTRANSTRANSFERASE |
| AT1G22850
| Predictedpull down | FSW = 0.2000
| Class C:plastid | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SNARE ASSOCIATED GOLGI PROTEIN (INTERPROIPR015414) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G032601) HAS 3098 BLAST HITS TO 3098 PROTEINS IN 664 SPECIES ARCHAE - 6 BACTERIA - 1614 METAZOA - 182 FUNGI - 59 PLANTS - 145 VIRUSES - 0 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK) |
| AT1G32990
| Predictedpull down | FSW = 0.0970
| Class C:plastid | PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G78630
| Predictedpull down | FSW = 0.0462
| Class C:plastid | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G43030
| Predictedpull down | FSW = 0.0306
| Class C:plastid | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
| AT3G14530
| PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.4881
| Class C:plastid | GERANYLGERANYL PYROPHOSPHATE SYNTHASE PUTATIVE / GGPP SYNTHETASE PUTATIVE / FARNESYLTRANSTRANSFERASE PUTATIVE |
| ATCG00160 | Predictedpull down | FSW = 0.0253
| Class C:plastid | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
| ATCG00830 | Predictedpull down | FSW = 0.0513
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
| AT4G37910
| Predictedpull down | FSW = 0.0451
| Unknown | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
| AT1G49530
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4881
| Unknown | GGPS6 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 6) FARNESYLTRANSTRANSFERASE |
| AT3G20160
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4881
| Unknown | GERANYLGERANYL PYROPHOSPHATE SYNTHASE PUTATIVE / GGPP SYNTHETASE PUTATIVE / FARNESYLTRANSTRANSFERASE PUTATIVE |
| AT3G32040
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6667
| Unknown | GERANYLGERANYL PYROPHOSPHATE SYNTHASE PUTATIVE / GGPP SYNTHETASE PUTATIVE / FARNESYLTRANSTRANSFERASE PUTATIVE |
| AT3G14510
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4881
| Unknown | GERANYLGERANYL PYROPHOSPHATE SYNTHASE PUTATIVE / GGPP SYNTHETASE PUTATIVE / FARNESYLTRANSTRANSFERASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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