Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G29800 - ( AAA-type ATPase family )

41 Proteins interacs with AT3G29800
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G09590

Predicted

interologs mapping

interologs mapping

Synthetic Lethality

interologs mapping

Phenotypic Enhancement

synthetic growth defect

FSW = 0.1220

Class C:

mitochondrion

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT2G20800

Predicted

two hybrid

FSW = 0.1212

Class C:

mitochondrion

NDB4 (NAD(P)H DEHYDROGENASE B4) NADH DEHYDROGENASE
AT4G35090

Predicted

Phenotypic Enhancement

FSW = 0.3043

Class C:

mitochondrion

CAT2 (CATALASE 2) CATALASE
AT1G53530

Predicted

Synthetic Lethality

FSW = 0.0216

Class C:

mitochondrion

SIGNAL PEPTIDASE I FAMILY PROTEIN
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0398

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G55920

Predicted

Phenotypic Enhancement

FSW = 0.2206

Unknown

ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT5G17760

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1000

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT3G19930

Predicted

Phenotypic Enhancement

FSW = 0.3061

Unknown

STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT5G26340

Predicted

Phenotypic Enhancement

FSW = 0.1029

Unknown

MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT1G12110

Predicted

Phenotypic Enhancement

FSW = 0.0093

Unknown

NRT11 NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT2G39480

Predicted

Phenotypic Enhancement

FSW = 0.2959

Unknown

PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G34450

Predicted

Phenotypic Enhancement

two hybrid

FSW = 0.4716

Unknown

HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN
AT3G07260

Predicted

Phenotypic Enhancement

FSW = 0.1709

Unknown

FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN
AT5G16820

Predicted

two hybrid

FSW = 0.0178

Unknown

HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR
AT1G76300

Predicted

Phenotypic Enhancement

FSW = 0.1698

Unknown

SMD3 (SNRNP CORE PROTEIN SMD3)
AT4G15900

Predicted

Phenotypic Enhancement

FSW = 0.0889

Unknown

PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G08260

Predicted

Affinity Capture-Western

FSW = 0.0482

Unknown

TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G34340

Predicted

Phenotypic Enhancement

FSW = 0.1556

Unknown

ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN
AT1G49520

Predicted

Phenotypic Enhancement

FSW = 0.3100

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT1G57620

Predicted

Phenotypic Enhancement

FSW = 0.1041

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT2G24960

Predicted

Phenotypic Enhancement

FSW = 0.1100

Unknown

UNKNOWN PROTEIN
AT2G29190

Predicted

Phenotypic Enhancement

FSW = 0.2000

Unknown

APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING
AT3G06460

Predicted

Phenotypic Enhancement

FSW = 0.0874

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G09800

Predicted

Affinity Capture-Western

FSW = 0.4590

Unknown

PROTEIN BINDING
AT1G08630

Predicted

two hybrid

FSW = 0.0364

Unknown

THA1 (THREONINE ALDOLASE 1) ALDEHYDE-LYASE/ THREONINE ALDOLASE
AT3G29060

Predicted

Phenotypic Enhancement

FSW = 0.3256

Unknown

LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 6 PLANT STRUCTURES EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE 4 ANTHESIS PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G140401) HAS 970 BLAST HITS TO 889 PROTEINS IN 159 SPECIES ARCHAE - 2 BACTERIA - 5 METAZOA - 379 FUNGI - 260 PLANTS - 176 VIRUSES - 28 OTHER EUKARYOTES - 120 (SOURCE NCBI BLINK)
AT3G53650

Predicted

Phenotypic Enhancement

FSW = 0.2319

Unknown

HISTONE H2B PUTATIVE
AT3G55070

Predicted

two hybrid

FSW = 0.0214

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CTLH C-TERMINAL TO LISH MOTIF (INTERPROIPR006595) LISH DIMERISATION MOTIF (INTERPROIPR006594) CT11-RANBPM (INTERPROIPR013144) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PROTEIN BINDING / ZINC ION BINDING (TAIRAT4G378801) HAS 669 BLAST HITS TO 649 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 334 FUNGI - 200 PLANTS - 87 VIRUSES - 0 OTHER EUKARYOTES - 48 (SOURCE NCBI BLINK)
AT4G24040

Predicted

Phenotypic Enhancement

FSW = 0.2258

Unknown

TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE
AT4G33950

Predicted

Phenotypic Enhancement

FSW = 0.3267

Unknown

OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE
AT5G06360

Predicted

two hybrid

FSW = 0.0178

Unknown

RIBOSOMAL PROTEIN S8E FAMILY PROTEIN
AT5G11570

Predicted

Phenotypic Enhancement

Affinity Capture-Western

FSW = 0.1481

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT5G38110

Predicted

Phenotypic Enhancement

FSW = 0.1077

Unknown

ASF1B (ANTI- SILENCING FUNCTION 1B)
AT5G52200

Predicted

Phenotypic Enhancement

Synthetic Lethality

Synthetic Lethality

FSW = 0.3147

Unknown

UNKNOWN PROTEIN
AT5G52210

Predicted

Phenotypic Enhancement

FSW = 0.0853

Unknown

ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT5G53120

Predicted

Phenotypic Enhancement

FSW = 0.3757

Unknown

SPDS3 (SPERMIDINE SYNTHASE 3) SPERMIDINE SYNTHASE/ SPERMINE SYNTHASE
AT5G57190

Predicted

Phenotypic Enhancement

FSW = 0.2235

Unknown

PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE
AT5G57270

Predicted

two hybrid

FSW = 0.0818

Unknown

UNKNOWN PROTEIN
AT5G19090

Predicted

two hybrid

FSW = 0.0930

Unknown

HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN
AT5G61220

Predicted

two hybrid

FSW = 0.1064

Unknown

COMPLEX 1 FAMILY PROTEIN / LVR FAMILY PROTEIN
AT5G17730

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1000

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454