Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G30390 - ( amino acid transporter family protein )
22 Proteins interacs with AT3G30390Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0219
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G45130 | PredictedReconstituted Complex | FSW = 0.1910
| Unknown | SPX3 (SPX DOMAIN GENE 3) |
AT1G55920 | Predictedtwo hybrid | FSW = 0.0955
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT4G37640 | PredictedAffinity Capture-Western | FSW = 0.0988
| Unknown | ACA2 (CALCIUM ATPASE 2) CALCIUM ION TRANSMEMBRANE TRANSPORTER/ CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT3G13445 | PredictedPhenotypic Suppression | FSW = 0.0571
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT2G43810 | Predictedco-fractionationCo-fractionation | FSW = 0.0342
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT1G21190 | PredictedSynthetic Rescue | FSW = 0.0431
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT4G33730 | PredictedPhenotypic Enhancement | FSW = 0.1453
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G15900 | PredictedPhenotypic Suppression | FSW = 0.0568
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G68390 | PredictedReconstituted Complex | FSW = 0.2513
| Unknown | UNKNOWN PROTEIN |
AT1G76920 | PredictedPhenotypic Suppression | FSW = 0.1303
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT2G14880 | PredictedAffinity Capture-WesternAffinity Capture-WesternPhenotypic Enhancementinterologs mappingAffinity Capture-MS | FSW = 0.2636
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT2G24960 | PredictedPhenotypic Suppression | FSW = 0.0710
| Unknown | UNKNOWN PROTEIN |
AT3G16840 | PredictedAffinity Capture-Western | FSW = 0.0468
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G12130 | PredictedPhenotypic Enhancement | FSW = 0.0760
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G52500 | PredictedPhenotypic Suppression | FSW = 0.0379
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT2G01070 | Predictedinterologs mapping | FSW = 0.0878
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G724801) HAS 500 BLAST HITS TO 499 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 271 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 33 (SOURCE NCBI BLINK) |
AT4G02120 | PredictedPhenotypic Enhancement | FSW = 0.0602
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT5G52210 | PredictedPhenotypic Suppression | FSW = 0.0487
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT5G53940 | PredictedAffinity Capture-Western | FSW = 0.0847
| Unknown | YIPPEE FAMILY PROTEIN |
AT1G80510 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0484
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G38820 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1185
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454