Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G30775 - ( ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5) proline dehydrogenase )

11 Proteins interacs with AT3G30775
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G09570

Experimental

FSW = 0.0163

Class B:

nucleus

mitochondrion

cytosol

Class D:

plastid (p = 0.78)

 CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE
AT5G48970

Predicted

two hybrid

Co-expression

FSW = 0.0504

Class C:

mitochondrion

 MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT4G17550

Predicted

two hybrid

Co-expression

FSW = 0.1131

Unknown

 TRANSPORTER-RELATED
AT5G39740

Predicted

two hybrid

FSW = 0.0117

Unknown

 60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT1G30230

Predicted

two hybrid

FSW = 0.0529

Unknown

 ELONGATION FACTOR 1-BETA / EF-1-BETA
AT1G10320

Predicted

two hybrid

FSW = 0.0896

Unknown

 U2 SNRNP AUXILIARY FACTOR-RELATED
AT1G03910

Predicted

two hybrid

FSW = 0.1177

Unknown

 EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CACTIN CENTRAL REGION (INTERPROIPR018816) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G368152) HAS 11516 BLAST HITS TO 6722 PROTEINS IN 356 SPECIES ARCHAE - 23 BACTERIA - 259 METAZOA - 6122 FUNGI - 1009 PLANTS - 493 VIRUSES - 33 OTHER EUKARYOTES - 3577 (SOURCE NCBI BLINK)
AT1G13950

Predicted

two hybrid

FSW = 0.0189

Unknown

 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR
AT1G73930

Predicted

two hybrid

FSW = 0.1641

Unknown

 UNKNOWN PROTEIN
AT2G47110Predicted

two hybrid

FSW = 0.0345

Unknown

 UBQ6 PROTEIN BINDING
AT2G28840

Predicted

two hybrid

FSW = 0.0627

Unknown

 ANKYRIN REPEAT FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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