Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G32040 - ( geranylgeranyl pyrophosphate synthase putative / GGPP synthetase putative / farnesyltranstransferase putative )

8 Proteins interacs with AT3G32040
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G36810

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6605

Unknown

GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1) FARNESYLTRANSTRANSFERASE
AT2G18620

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6909

Unknown

GERANYLGERANYL PYROPHOSPHATE SYNTHASE PUTATIVE / GGPP SYNTHETASE PUTATIVE / FARNESYLTRANSTRANSFERASE PUTATIVE
AT3G29430

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6667

Unknown

GERANYLGERANYL PYROPHOSPHATE SYNTHASE PUTATIVE / GGPP SYNTHETASE PUTATIVE / FARNESYLTRANSTRANSFERASE PUTATIVE
AT3G14550

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

FSW = 0.6909

Unknown

GGPS3 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 3) FARNESYLTRANSTRANSFERASE
AT3G14530

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

FSW = 0.6909

Unknown

GERANYLGERANYL PYROPHOSPHATE SYNTHASE PUTATIVE / GGPP SYNTHETASE PUTATIVE / FARNESYLTRANSTRANSFERASE PUTATIVE
AT1G49530

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6909

Unknown

GGPS6 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 6) FARNESYLTRANSTRANSFERASE
AT3G14510

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6909

Unknown

GERANYLGERANYL PYROPHOSPHATE SYNTHASE PUTATIVE / GGPP SYNTHETASE PUTATIVE / FARNESYLTRANSTRANSFERASE PUTATIVE
AT3G20160

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6909

Unknown

GERANYLGERANYL PYROPHOSPHATE SYNTHASE PUTATIVE / GGPP SYNTHETASE PUTATIVE / FARNESYLTRANSTRANSFERASE PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454