Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G33520 - ( ATARP6 structural constituent of cytoskeleton )
23 Proteins interacs with AT3G33520Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G12810 | Experimentalpull downReconstituted Complexcoimmunoprecipitationin vitro | FSW = 0.0384
| Class A:nucleusClass D:nucleus (p = 0.78)cytosol (p = 0.67) | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G38810 | Experimental | FSW = 0.0737
| Class A:nucleusClass D:nucleus (p = 0.78) | HTA8 (HISTONE H2A 8) DNA BINDING |
AT5G37055 | Experimentalin vitrotwo hybridReconstituted Complextwo hybridpull downReconstituted Complexcoimmunoprecipitationin vitro | FSW = 0.1642
| Unknown | SEF (SERRATED LEAVES AND EARLY FLOWERING) |
AT1G52740 | Experimental | FSW = 0.0153
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT3G54560 | Experimental | FSW = 0.2653
| Unknown | HTA11 DNA BINDING |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.0272
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT3G04840 | Predictedtwo hybrid | FSW = 0.0176
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AA) |
AT5G09660 | PredictedAffinity Capture-MS | FSW = 0.0054
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT5G08740 | Predictedtwo hybrid | FSW = 0.0832
| Unknown | NDC1 (NAD(P)H DEHYDROGENASE C1) NADH DEHYDROGENASE |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.0178
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT5G19990 | Predictedtwo hybrid | FSW = 0.0117
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT5G40370 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | GLUTAREDOXIN PUTATIVE |
AT4G01510 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | ARV2 |
AT4G00660 | Predictedtwo hybrid | FSW = 0.0118
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT4G13350 | Predictedtwo hybrid | FSW = 0.0381
| Unknown | NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE) GTP BINDING / GTPASE |
AT5G05460 | Predictedtwo hybrid | FSW = 0.0298
| Unknown | HYDROLASE ACTING ON GLYCOSYL BONDS / MANNOSYL-GLYCOPROTEIN ENDO-BETA-N-ACETYLGLUCOSAMINIDASE |
AT5G20000 | Predictedtwo hybrid | FSW = 0.0532
| Unknown | 26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE |
AT5G67220 | Predictedtwo hybridtwo hybrid | FSW = 0.0385
| Unknown | NITROGEN REGULATION FAMILY PROTEIN |
AT5G67540 | Predictedtwo hybrid | FSW = 0.0205
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT4G14000 | PredictedSynthetic Lethality | FSW = 0.0106
| Unknown | UNKNOWN PROTEIN |
AT5G19360 | PredictedAffinity Capture-MS | FSW = 0.0137
| Unknown | CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G67100 | PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
AT2G45810 | Predictedtwo hybrid | FSW = 0.0199
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454