Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G42050 - ( vacuolar ATP synthase subunit H family protein )
18 Proteins interacs with AT3G42050| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G78900
   | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2180
| Class C:vacuoleplastidplasma membrane | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT1G76030
| PredictedPhenotypic SuppressionAffinity Capture-MS | FSW = 0.2815
| Class C:vacuoleplastidplasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT |
| AT2G21410
| PredictedReconstituted Complexco-fractionationCo-fractionationAffinity Capture-WesternReconstituted ComplexAffinity Capture-Westernco-fractionationCo-fractionationinteraction prediction | FSW = 0.4481
| Class C:vacuoleplastid | VHA-A2 (VACUOLAR PROTON ATPASE A2) ATPASE |
| AT1G20260
| PredictedAffinity Capture-MS | FSW = 0.1333
| Class C:vacuoleplastid | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT3G01390
| PredictedAffinity Capture-MS | FSW = 0.3647
| Class C:vacuoleplasma membrane | VMA10 (VACUOLAR MEMBRANE ATPASE 10) HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
| AT4G02620
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4610
| Class C:vacuoleplasma membrane | VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN |
| AT3G58730
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2874
| Class C:vacuoleplasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD) |
| AT4G11150
| Predictedtwo hybridtwo hybridtwo hybridin vitroCo-expression | FSW = 0.1113
| Class C:vacuoleplasma membrane | TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT4G17170
| Predictedtwo hybridtwo hybrid | FSW = 0.0173
| Class C:vacuoleplasma membrane | RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) GTP BINDING / GTPASE |
| AT1G64200
| PredictedAffinity Capture-MSCo-purificationin vitrotwo hybrid | FSW = 0.4449
| Class C:vacuole | VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT2G30710
| PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.0778
| Class C:vacuole | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
| AT5G52640
| PredictedSynthetic Lethality | FSW = 0.0058
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT5G60790
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0376
| Class C:plasma membrane | ATGCN1 TRANSPORTER |
| AT5G12480
| Predictedbiochemical | FSW = 0.0164
| Class C:plasma membrane | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT2G44580
| PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0133
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
| AT3G08560
| PredictedAffinity Capture-MSCo-purificationAffinity Capture-MS | FSW = 0.5161
| Unknown | VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
| AT3G45630
| PredictedSynthetic Lethality | FSW = 0.0241
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G14230
| PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.1739
| Unknown | NUCLEOSIDE PHOSPHATASE FAMILY PROTEIN / GDA1/CD39 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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